DreINT0100903 @ danRer10
Intron Retention
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22417560-22418084:-
Coord C1 exon
chr21:22417934-22418084
Coord A exon
chr21:22417855-22417933
Coord C2 exon
chr21:22417560-22417854
Length
79 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
ATAATGAGTGTGTTTTGTAGTGT
3' ss Score
3.35
Exon sequences
Seq C1 exon
GCGTTCATGACCCAGAACTCTGCCAAGCAGAACGAGCACTGCCTGAAGAACTTTGACCTGGCGGAGTACCGACAGGTTCTGAGTGACCTCTCCATCCAAATCTATCAGCAGCTTGTGAAAGTTGCCGAGGCCAACATGCAGCCCATGATCG
Seq A exon
GTAGGTGCAGAGAGACACCAAACCAAAGAAGATTGATCATTAGCACAGTACATTTTTTCATAATGAGTGTGTTTTGTAG
Seq C2 exon
TGTCTGCCATGCTTGAGAGCGAGAGCATCCCCAGCCTGGCCGGAGTGAAGCCCATGGGTTACAGGAACCGCTCCTCTAGTGTGGACTGTGAGAGTGGAGGTCCCGCAGGATACACGCTTCAGGCACTGATCAAACAGCTGGCTCAGTTTTACTCTACCATGGCGGACCACGGCCTGGACCCTGAGATCAGCCAGCAGGTGCTTCGCCAGCTCTTCTACTCCATCAACGCAGTGACCCTCAACAACCTGCTGCTGCGCAAGGACGTCTGCTCCTGGAGCACCGGCATGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003:ENSDART00000166835:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=PU(31.1=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAACTTTGACCTGGCGG
R:
CCTGTAACCCATGGGCTTCAC
Band lengths:
173-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]