RnoINT0097282 @ rn6
Intron Retention
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70716102-70717776:+
Coord C1 exon
chr18:70716102-70716252
Coord A exon
chr18:70716253-70717490
Coord C2 exon
chr18:70717491-70717776
Length
1238 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TAACTGTGCCTTCCTTTCAGTTT
3' ss Score
10
Exon sequences
Seq C1 exon
GGTTTCATGACACAGAACACGGCGAAGCAGAATGAGCACTGTCTCAAGAACTTTGACCTCACTGAATACCGTCAGGTGCTAAGTGACCTTTCCATTCAGATCTATCAGCAACTCATTAAAATTGCTGAGGGCCTGCTACAGCCTATGATAG
Seq A exon
GTAAGCTGGAGCTGCTCACATCTTGGGGTCTGGAGGAGGAGGGCTGTGGCAGGCTTGCCTTTCAGGAACCAAGCGTTACTAGGTATGGCCTCCAAGCCAGAGCCTTCTAGGAAAGGCATAGGGTGTAGTATACATTGTGCTTAAGACTTGGGTAATTTTCAACAGCATACTATAAAAACAGGATGCCAACAGAGCAGCAAGGTAGCTTTCCTTAATGTTTTATCTATAGTAATTTCCACAAGCAATGTAATGGTGTGAATGCAAACACAGTGAAGACAGTGTCTTCTTGCCTGTGGGGTGCTTGTGAACCAAGCTGCAGGGAGCACAGGGCGATCCTGTTTACCTGCTTTGTACACAGCAAGGAGTGCACTTGAGTGTTGAGGGTGAAATCAGAATGGAAAGAACAGCTACATTGTAACGGTAGACGGTAGACGGACACATATTTGCCACTCAGTGCACCATGAAGGCAGGGAAAGAAGTTAAACCTGGACCTGTGTAATGGCATCTCTAGGTCCTCACAGCGCAAACAGGCTGAGTGAATCCCAGAAGGTTTGGGATATTCTTGGGATAAATTTCATATCAAATCTTCCCCTCCTATCTAGTTTTCTCCTAAGGTCCTTCCCACATAGAAGAAGAACTAATAGATCAGGCTGGATGTGTTTCAAAACTCGGAATAATGGTGGTTGGTTGCACCAGACCCCAAGCAAGACCTGGGTTCCAATCCTGGTGCCGTCTCTTCCTAACTGCGTTCTTGTACCCAAATTATACAACCTCTTTGTGCTTCAGTTCGCTCATTGGTAAAGTGGGTAGCACCTCATCGGGCTGCAGGCTGAATGGAAGAGGTCCTGTCCATAAAGCACTACCTGGTGCACAGTTAAAGGCTATTGAATAAAGATGTTGAAGCAACTAACCTAATAGTCACACAGTTGGTGCCTGGGTTAGACCCTACCAGAGTTAGCTCAGTCCTTAAACTTTGATACTTGGCAGAGGTAGTACAGAGTCCAGCTAGTATATTATCCATTGTCTTTCTCCAATCACCAATGAGTTTAAGTAACATTATGTTCCATAGTTACTTTATTCAACATGGAAGTCCATCAGATTCAAAGTTCTTTGCCAAATATATTGAGTCCCTGAATATGTCGACCCTGTGCATATCTGAATGGTTTCATTGACCTGAGTGACCTTATGGCAGAGTTTTGATAGGAGCATACAGGCTTCTAACTGTGCCTTCCTTTCAG
Seq C2 exon
TTTCTGCCATGCTGGAAAATGAGAGTATCCAGGGGCTGTCAGGGGTGAGGCCAACTGGCTACCGGAAGCGCTCGTCCAGCATGGTGGACGGAGAAAATTCGTATTGCCTGGAGGCCATCATCCGCCAGATGAATTTCTTTCATACAGTCCTGTGTGACCAGGGCCTGGACCCTGAGATTATCCTGCAGGTGTTCAAACAGCTTTTCTACATGATCAATGCGGTGACTCTTAACAACCTACTCCTGCGGAAAGATGCCTGCTCCTGGAGCACCGGCATGCAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104:ENSRNOT00000019512:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0184314=DIL=PU(31.1=34.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACACAGAACACGGCGAAG
R:
GCTGTTTGAACACCTGCAGGA
Band lengths:
346-1584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]