BtaINT0004195 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr12:34020678-34021307:-
Coord C1 exon
chr12:34021208-34021307
Coord A exon
chr12:34020777-34021207
Coord C2 exon
chr12:34020678-34020776
Length
431 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTGGTCTCTTTATCTTACAGCAA
3' ss Score
10.24
Exon sequences
Seq C1 exon
CACGGCCAAGTACAGCGTGGTGACGTTTCTACCTCGATTCTTGTACGAGCAGATCAGGAGAGCTGCCAATGCCTTCTTCCTCTTCATTGCCTTATTACAG
Seq A exon
GTGAGGTTTATATAAAATTCATAGCTTTAATTGCATGGAAAATAAGCTTTTGCTGAAAGGTCACTTAACTGAGAAAGTGTTGTCATACTTGATGAAGTTTGCTTCCTTCATCCAGTCACTGTTTGCATGAATGCGATATTTGCATAAAGGTGGAGTTCTTTAGCTGTTTGCTTAAGGGAATTGCAGTTGTGAAAAGAGGCGTTGAAACATGATTGTGGGGTCCCACTTTAACCCTGTTTTTGTCCCAAACACAGAGATGTTGGGTAAAATGTTAAAGACATGTAACACACTTAGCTAATTTTTAAAATAAGGTAATCACTTTGCAACAGAAATGGAATAGATCTACAGTGAGGAGTGAGTACTGTATTTCCTTTCTCATGGAGAGGATTTTAATGTGCCTAGTCCCTACTTTTGGTCTCTTTATCTTACAG
Seq C2 exon
CAAATTCCAGATGTATCTCCAACAGGAAGATACACCACCCTGGTGCCATTGATCATTATTTTAACAATCGCAGGCATCAAAGAGATTGTAGAAGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019529:ENSBTAT00000061132:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGCCAAGTACAGCGTG
R:
AAATCTTCTACAATCTCTTTGATGCC
Band lengths:
198-629
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development