HsaINT0015359 @ hg19
Intron Retention
Gene
ENSG00000132932 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:13533]
Coordinates
chr13:26104137-26104798:+
Coord C1 exon
chr13:26104137-26104236
Coord A exon
chr13:26104237-26104699
Coord C2 exon
chr13:26104700-26104798
Length
463 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TGTGGTCTCTTATCTTCCAGCAA
3' ss Score
9.84
Exon sequences
Seq C1 exon
TACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATTCTTGTATGAGCAGATTAGAAGAGCTGCTAATGCCTTCTTTCTCTTCATTGCCTTATTACAG
Seq A exon
GTAATGGTTTTTTAACAGTTCCTTGGAATTCACTTAATTACATGTAAAATGAGATTTTGCTAAAGGTTCCTTAACTGCTAAAGTGTTATAATCTTGGAATATAGTTTGTTTCCCTCCTCTAGTCATTGTTTGATAGAGTGAACAAGCCTGACTTTGTATACAGGGAGATTTCTTTTGGTATGGCCTTGAGGATGATTGCAGTGACTGAAAGAGGCATTGAAAAGTGGCCTTAGGGCCATACTTTTAAGCCTTTTTCTGTTCCAAACACATAACCAATGTTGGATAAAATTTTTAAAAATATGTAAAATACGTAGCTAGTTTTTAAAGTAAGGTAATTATTTTTGAGTAACAGAAATGGAACAGAACTGCAAAAGTGTGAAACGTACGTGACTGCCGTAATTTTCTGTTCATGGAGAGGATTTTTAATGTGCCAACTTCCTACTTGTGGTCTCTTATCTTCCAG
Seq C2 exon
CAAATTCCAGATGTATCTCCAACAGGAAGATATACCACCCTGGTGCCATTGATCATTATTTTAACAATTGCAGGCATCAAAGAGATTGTAGAAGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932-ATP8A2:NM_016529:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGCCAAGTACAGCGTGTT
R:
AAATCTTCTACAATCTCTTTGATGCC
Band lengths:
198-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)