RnoINT0023724 @ rn6
Intron Retention
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40351384-40352123:-
Coord C1 exon
chr15:40352024-40352123
Coord A exon
chr15:40351483-40352023
Coord C2 exon
chr15:40351384-40351482
Length
541 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCTCTCTTGTTCTCTTACAGCAA
3' ss Score
11.93
Exon sequences
Seq C1 exon
TACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATTCCTGTATGAGCAGATTAGGAGAGCTGCTAATGCCTTCTTCCTCTTCATTGCCTTACTACAG
Seq A exon
GTAATGGGTTTCAGGACCTAAAAGTCGAGATCCCAGCTACGTGCAAAGTGAGATTCTCCCGGCCTTTACCGGAAACATGTTAGAATATGTATATAGTTCCCTTCCGCAAATTCTCACTAGGGTGAACAGACCCGATCTTTGTCTGAAACACTTGGGAGGGAAGTCTTTAAAAATATGTACAGTTACAAAAGGGGAGCGGAAACTGGTTCTCGTGGGTCATACCTTGTCAGGTTTACTTTCTCTTGTTTTCTTTTATTATTAATGCACATTCATTCTATTAGATATGATGTTTCGCTGTGATACTTCATACACGTATATCATGCATGTATTTTGGCCACGAAGGTCATATTTTTGACCTTCCATTTTCCTTTCCAAATGCATTGCCGGGTTGTTAGGTAAACTACATAGCTAGGTTTTGAATTAGTAGACCTTTTGTTGTGTAACATAAATGAACCAGACTAGTGAGGGTGGGGGTTGGGCACCATGTCTTCCTTCTTTGTGGAGACGTTCGCCCGTCTCAGTCTCTCTTGTTCTCTTACAG
Seq C2 exon
CAAATCCCAGACGTATCGCCAACTGGACGGTACACCACCCTGGTGCCATTGGTCATCATTCTAACGATTGCAGGCATCAAAGAGATTGTAGAAGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053:ENSRNOT00000011451:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGCCAAGTACAGCGTGTT
R:
AAATCTTCTACAATCTCTTTGATGCC
Band lengths:
198-739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]