GgaINT0111575 @ galGal4
Intron Retention
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176021237-176022018:+
Coord C1 exon
chr1:176021237-176021336
Coord A exon
chr1:176021337-176021919
Coord C2 exon
chr1:176021920-176022018
Length
583 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAG
5' ss Score
8.73
3' ss Seq
CTTTTCCTTTCTGTTCACAGCAA
3' ss Score
10.63
Exon sequences
Seq C1 exon
CACAGCCAAGTACAGTGTGGTGACTTTTCTACCTCGATTCCTGTATGAGCAGATAAGAAAAGCTGCAAATGCGTTCTTCCTCTTCATTGCCTTACTGCAG
Seq A exon
GTATAGTTTTATTGTTTTACTTTCATTTATTAAATAACTGAATGTAGTTAAACTTATTTGAATGTTCATAGTCAACTGCAAAGAAATTCTCAAATGAATGTTAGGTAGGAACATTGATGAGATATGTACTTAATAATTGAAAGTAGAGGGTATTCGAGCTGTTTTTTCCAACATAATTCCTAAAATCAAGCTAGTTATATTCTCAATGTAGTAGTATCACAAAATATGGAACTACTGACCATACTGGGAAAAACGTGCATAGATTCTTGTGAATGTGCTGATTGTTTAAATAGTACTGATACTCACCCTGAGTCAGTGATATTCATCAATCGAATGCTTTTCTTGTTAAGAAGAAGTAAAATAAAAGGGATGTACAGCAACATAATCATATACATTCATAGCTGTCGCTTCTTCAAGTTGGTTGAGAGCTTAGTCTGGTGTGTCCACTGAACTTAAATGGTAATCAAGTACAAATCAGAATTTAAGCTCTCTTTTTCTGCTGGTAACTTTGCATAAAATGCTAAATTTGCTAGAAACTTATTTTAGAAATAAAATGAGCATCTCTTTTCCTTTCTGTTCACAG
Seq C2 exon
CAAATTCCAGATGTCTCTCCGACAGGAAGATATACCACCTTGGTGCCATTGCTATTTATTTTGACAGTTGCTGGCATCAAAGAAATCATAGAAGATTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106:ENSGALT00000027641:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCAAGTACAGTGTGGTG
R:
TCTATGATTTCTTTGATGCCAGCA
Band lengths:
191-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]