MmuINT0021757 @ mm9
Intron Retention
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60664841-60665597:-
Coord C1 exon
chr14:60665498-60665597
Coord A exon
chr14:60664940-60665497
Coord C2 exon
chr14:60664841-60664939
Length
558 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TCTCTCTTGTTCTCTTACAGCAA
3' ss Score
11.93
Exon sequences
Seq C1 exon
TACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATTCCTGTATGAGCAGATTAGGAGAGCTGCTAACGCCTTCTTCCTCTTCATTGCCTTATTACAG
Seq A exon
GTAATGGTTTTTAAGGACTTAAACATTGCAAGCTCAATTATGTGCAAAATGAGATTCTTTAGTAAGTGCCTTTATTGGAAAAGTGTTAGAATATTTACATAGTGTCCTTCCTCAAATTATCACTAGGGGGGACAGACCTGATCTTGGTATAAAACAAACGTGGGAGGGAAGTCTTTGAAAAAAGAAGTTACAAAAGGGGAGCAGAAACTGGTTCTTGTGGGTCCTACCTTGTCATGTTTACCTTTTCTTGTTATTTTTAAAATTATTAATGCACATTCATTATATTAGACATGATATTTCACTGTGACACTTCATACATATATACCATTCATGTATTTTGGCCATGAAGGTCATATTTTTGACCCATTTTTCTTTTCAAATACATTACCAGGTTGTTAGGTAAACTTTCAAATGCAAACTACATAGCTAGGTTTTGAATTAGTAGGCCTTTTGTTGTGTAACAGAAGTGGACCAGACTAGCGAGAGTGAGGAGGGTTGAGTACCATGTCTTCCTTCTTTGTGGAGACTTTCATCCCAGTCTCTCTTGTTCTCTTACAG
Seq C2 exon
CAAATCCCAGACGTCTCACCAACAGGACGGTACACCACCCTGGTGCCCTTGGTCATCATTCTAACGATTGCAGGCATCAAAGAGATCATAGAAGATTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983-Atp8a2:NM_015803:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012215=E1-E2_ATPase=PU(6.2=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGCCAAGTACAGCGTGTT
R:
AAATCTTCTATGATCTCTTTGATGCC
Band lengths:
198-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: