BtaINT0004203 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr12:34019128-34019880:-
Coord C1 exon
chr12:34019835-34019880
Coord A exon
chr12:34019169-34019834
Coord C2 exon
chr12:34019128-34019168
Length
666 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GTTTTGTTTTTCTTTGTCAGTGT
3' ss Score
8.17
Exon sequences
Seq C1 exon
AAGCGACATAAGGCAGACAATGCAGTTAACAAAAAGAAAACCATAG
Seq A exon
GTAAGATTCCAGGCTGACTCACTTTTTCTGCTAGAAAACTTAAGAACAAAACTTGCATTTAAGGAGTTTTAAATCGGTAGTTAATGGTGTTGAGATAAATTGAGGGAAGTAATCTATAAAATACATTAAAGATAGCAAAATGTCAGACAAGTCCAACAGAAGGTGAGTCCTGGTAGTTAAGATTTGAACAGGATTTGTGTAGAATTTAAGAAAAGATGGTAGTTTTCAGGAGCGAGACATACTTTATGTCCATAAAAAGTCAAAGCATTTATACTCTGGCTTTGCAATTGCTCCCTACCTCTGTCTACTTATTCTAGCATTTCTAGAACAGTAGCTCTGTGTTATTAGGGGGTGCATATGTGTTTTGGTAAAATCTTGCAGCAACACAGTGATTTCCTTTACTTCATATGGGCTAAATATGCATAGATGTAACTTCCTTGCATACACATGTATTTATGTGAGTGCATTGCTGTATATATGGTATGTAAGTATCTTGATGGGGCTCTGTTTTGGGGAGTGGTGGTATTACACCTTTATATCTAAGGACATGGTGTATTGGAATTAATCAGTGGAATTTTAAAAGGAGCCTTTTGGAGTTTGGAAAGCTGGTCTTATTCTGATTATCATAGGTATTAACCAATACATTGTTTTGTTTTTCTTTGTCAG
Seq C2 exon
TGTTAAGGAATGGTATGTGGCAAACCATTGTGTGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019529:ENSBTAT00000061132:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(5.5=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development