RnoINT0023731 @ rn6
Intron Retention
Gene
ENSRNOG00000008053 | Atp8a2
Description
ATPase phospholipid transporting 8A2 [Source:RGD Symbol;Acc:1594597]
Coordinates
chr15:40349699-40350495:-
Coord C1 exon
chr15:40350450-40350495
Coord A exon
chr15:40349740-40350449
Coord C2 exon
chr15:40349699-40349739
Length
710 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TTATCGTTTCTTCTTTACAGTGT
3' ss Score
9.7
Exon sequences
Seq C1 exon
AAACGACACAAGGCCGACAATGCAGTTAACAAGAAGAAAACAATAG
Seq A exon
GTAAGCAACCAGGCCCGGTCACTTTTCCCATTGTTAATTCAGGAACAAGTCTTGTGTTTGAGTGTTTCTCAATCACTGGCTCTTGATATTGAGATTAAATTGGGAATGTTATCTATAAAATCTTTAAAGAGAGTGAAGCATAGTAAAATAAAATGTTAGTGTTTATAGTAATGTATTAAGGGAATTTGTATACACTGGGATTTTAGAAGACAGAATTTTTAGAAATTAGTTTATGCCCCTAATAAGTTTCCCATATTTTTGCTTACTTTCCTTATTATTTGTGTATATATATATGCATATATATATTGCTAGTATTGCTAGTGTAGTGTATTGATATGTATTAATCATTATGTAAATAATCATATTTAATGCCATACAATGGTCCTTACCTAGATGAATATGTGTAACTGACCACGGTCATTCGGCCTCAGGGTTGAATTTGCTAGTATTGCTGCTGGGCTAAATACAAATTTGCTTTATTTACGTGCACACAGAAGTGTGTGTGTGTATTCACACACGTATGTTGTGGAGGTGCACAGTCGGAGGACCATGTGTGCATGGTTTGGTCATCCACCTTTCTTAAAAAAAATGATGTGATTTGTGGGGATTAATTAGTACAACTTTCACAGAACTCTTTTGGATTTGTAGACAGCTGATGTTTAATTTGGAGTCCCGCCAACATTGACCAGTTTATCGTTTCTTCTTTACAG
Seq C2 exon
TGTTAAGAAATGGCATGTGGCACACTATCATGTGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008053:ENSRNOT00000011451:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(5.5=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]