MmuINT0021775 @ mm10
Intron Retention
Gene
ENSMUSG00000021983 | Atp8a2
Description
ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 [Source:MGI Symbol;Acc:MGI:1354710]
Coordinates
chr14:60044317-60045013:-
Coord C1 exon
chr14:60044968-60045013
Coord A exon
chr14:60044358-60044967
Coord C2 exon
chr14:60044317-60044357
Length
610 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
TCACTGTTTCTTCCTTACAGTGT
3' ss Score
11.2
Exon sequences
Seq C1 exon
AAACGACATAAGGCAGACAATGCAGTTAACAAGAAGAAAACAATAG
Seq A exon
GTAAGCAACCAGGCCCAATCACTTTCCATTGTTAATTTAGGATCAAGTCCTGTGTTTGAGTAATTCTTAATCAGTGGCTATTGACACTGAAATTAAATTGGAAATACTATCTATAAAAATCTTTAAAGAGAGAGAAGCATAGTAAAACAGAATGTTTGTGTTTATAGTAATATATTAATGGGGTTTGTATACATTGGGGTTTTAGAAGATAACATTTTCAGAAATTAGTTTATGCCCCTAATAAGTTTCCCGTATCCACAGGTTCGTTTTTTTGCTCACTTCCCTTATTATTTTGGTTTTTATCTTACCTCTGTTTTCTGTTGCTGGTATTGCTGCTATTGGAACTGTGTAACACCAGGCCTTTTCTACTCCTGAGCTAAATACAAATTCTCTTTGCTTACATGCACACATAAGTGTGTGCGTGTTCCCACATGTATGTTGTGGAGGTGCACAGACGGCGGCCCATTTGTGCATGGTTGGTCATCTACCTTGGATATGATTTGTGAGGATCAATAAGTACAACTTCACAGATGTCTTTAGATTTGTAGACAGCTGACTTTTCATCTTGAGTCCCGCCATTATTGACCATCTCACTGTTTCTTCCTTACAG
Seq C2 exon
TGTTAAGAAATGGCATGTGGCACACTATCATGTGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021983:ENSMUST00000080368:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(5.5=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types