GgaINT0111577 @ galGal3
Intron Retention
Gene
ENSGALG00000017106 | ATP8A2
Description
NA
Coordinates
chr1:181069389-181071438:+
Coord C1 exon
chr1:181069389-181069434
Coord A exon
chr1:181069435-181071397
Coord C2 exon
chr1:181071398-181071438
Length
1963 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
AGTTTACACTTTCTTTTCAGTTC
3' ss Score
7.48
Exon sequences
Seq C1 exon
AAAAGACATAAGGCAGACAGTGCAGTGAACAAAAAGAAAACAGTAG
Seq A exon
GTAAGAATAAAGAATCTTCAATATTTGAAGTGCAAATAGTGAATACCAGAGTACTTTTTTTTTTTTAAATATAGACTTCTGTTGCTGAAACTGTCATTATAGTGGCAAGCACATGTCTTTTTGGAGTAGGTGGTTACTGGTATGCCAGGACTGCACTTTACACAATGTTTGATGCTGACTGTGTGACACCTGGGGGTGAGAGGTTAGGGGTAAGCTTCTACAGTTTAAAAGCTGATTTAATTTCAGGGTTGTCTGAAGTCACGCAGTTCTCAGCTCCTCCATGAAAACAGAGCAGTTTTCTCCTCTTCCAGAATACTTCCTTGACTGTTCAAAATCCACTGAGGCTATAAAGCTTGTGTCAAAGGATATATATATACATATATATATATGCTGCTGCCCTTAAAATATAGGAAGAACTCTGGGTATTCTGTGGATGTGCGTTCTTTGAGGTGTCAGCAAAAGAAAAGAATAACAGACTTCCCATAAATGCCTGTGTTTACCCCTAATGCATTGAAACTGCTTGACACTGATTACCTCATGACATCATTTTGATTTTCTTTTCCCTTAACTGAAAACGTGTGCCGAAAACAATAAGGATTTATTGATTGCTACCCCACAGCCACTCTGCAGTCACAGGTTCTTGGTGTTCTCAGACGTTCCACAATGGAGCTCCATAGGTGAAACCGAAAACAAAGCGATGTGAACTTTCAGTAGAGCAACTTTCTTCCAAAGTGGTTGGACTTGGTGATCTTAAGAGGCTTTTCCAGCCTAAATGATTCTGTTTCTAGGATTCTGTATGTAGTTTAAGTGTCAAAAAACTAAAGAAACACTTAGTGGAACATGAGGATCAAAAAAACATGCTAGATCCATGCTTCAGTTAACAGGCAAAATATATGCAGAAATATTTTCAGTGTGCTTTTCCTTAGTGCTTGAGAGGTGATATTGGTCATTGAGGTTGTATATTAATGAACATCAAAGAAAGCATCACTTTATCAGTTCTTTAAGGTATTTTTTTCTACAAGTTTGAGAAGATGTTGCAGATGCAGATATTAATCCTGGTAAATGTGCAGTTATCTGGCTGTAGAACAACAGAACTTGCTATAGATAACATAAGAGGCTGCTCTTTCCAAGGTCATGTAGGCAGTTCGGTCTAATCCGTTTATGGATAGAGACAAACTAACAAACTCTTAAGAGGAAGCTTACCATAGTAGTTGTGGAGAGACAGCCTAAAAAACACAATATACTCTTATGGATCTAACTGGAACTTAGCAATTGAAAAGCAATTGTTTTGGTGTAGTTCAACTTGTATTTTTTGCATTTATATTCTAAATACAGTTTTCAGAATACACTGCCTGAAACTGTCATCATTTTTTTTTAAGAGGAAGGTTAGAAAGGCACATTTATGAGAGTGTTATAGGAGTGAAAAAAATGTATTTTAAGTATGAAAAGCTTATTTATGTTCAGAGTGGAATTAGGGTGTTTTAAATTGAGGTTCTGTATGTGCTTTTAGATACTTAGATGCCTCATACAGCTGAGTGAGGCCTAGGCCATGTCATCGGTACAGAGAGCAGTTATGCTTACCCGCAAGCAGACATCCGTTGTCTGCTTAGATATGTTCTGAACTCCACCTGTAGTGACCAGATGCTTGCTTCATTAACATGCATATAGACGTTGCATTTATCTCTGTTTAGCTTTTGATCTTTTGATCTTTATTGTCTAGCTTCAAAGCATGTTTCCTGTTTGCAATTTCCCATAGAATATGTTGACTTGGTTTGCAGAGTCGGTTAGGTATACATGAATTAAATTGCCTTTGGAAGAAACTCAACTGAAAATTGTTCTTCAAGTGAGCATGTGCAACTATGCTAGGAGCTGAAGTATGTTAGGCTTGCCAATGTTGTGTGTATTGTGCATTTGTCTGAATCTTGGGTATTTATTCTGTTCTAAGTTTACACTTTCTTTTCAG
Seq C2 exon
TTCTAAGAAATGGGATGTGGCAGGACATCGTGTGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106:ENSGALT00000027641:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(5.5=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]