HsaINT0015368 @ hg19
Intron Retention
Gene
ENSG00000132932 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:13533]
Coordinates
chr13:26106410-26107451:+
Coord C1 exon
chr13:26106410-26106455
Coord A exon
chr13:26106456-26107410
Coord C2 exon
chr13:26107411-26107451
Length
955 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTTATTTTTCTCTTTTTCAGTGT
3' ss Score
12.07
Exon sequences
Seq C1 exon
AAGCGACACAAGGCAGACAATGCAGTTAACAAAAAGAAAACAATAG
Seq A exon
GTAAGATCCCAGGCTGAAGGACTTTTTCCACTGGAAAACTTAAGAATAAGGCCTGCATTTAAGGAATTTTAAATAAGTAGTGAATGGTATTGAGATAAATTGGGAAGATGATCTATAAAATAAAGAAATAGTAAAATAACAAACAAACTGAACATAATTTTAGTCCTGATAATTAAGTTTGAACAGCATTTGTGTATTTTAGAATGTTAGAAAAGGTTGTAATTTTCAGGAACTAGACAGTTTTTATGTCCATAAAAAGTCTAAGCATTCATGTCCTTCATTTATAATCTCTCCTTACTTCCCTCTTCTACTTTTTATTGTTTTATTTCTACAACATCAATTTTTTGTTTGTTTGTTTCATTTTTTGAGACAGGGTCTCACTCCTGTTGCCCAGGCTGGACTACAGTGGCATGATCATGGCTCACTGTAGCTTTGACCTCCCAGGCTCAGGTGATCCTCCCACCTCAGCCTCTTGAGTAGCTGGGACTACAGGCAAGCACCACCACCCCCGACTAATTTTTGTATTTTTGGTAGAGATGGGTTTCACCGTGTTGCCCAGGCTAGCCTCAAACTTCTGGGCTCAAGCAGTCTGCCTGCCTTGGCTTCCCAAAGTGTTAGGATTACAGGTATGAGCCACTGCGCCCAGCTGTTCAGTTTTTTTTAAATTGTGGAACAGCAGGCTTTTTTTTTCTTCTGGGCTGAAAATAAGTAGATTTAACTTACATACATACATAAACATTTATGTGTATGCATGAATGTATATATGTTACAGAGGTACATACCATACGTTGGTGTTCCATTTTGAGGGTGGGGGTGCTGATGTTATGCCATCATGGCTAAAGATAGGGTATGTTAGAATTAATAAATGGAATTCTAAAAGAAAGCTTTTGGATTTTAGGAAGCTGATTCAATTTAACACCAGTATTAACCAATATTTTATTTTTCTCTTTTTCAG
Seq C2 exon
TGTTAAGAAATGGTATGTGGCATACCATTATGTGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932-ATP8A2:NM_016529:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(5.5=100)
A:
NA
C2:
PF0012215=E1-E2_ATPase=PU(3.4=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)