BtaINT0005158 @ bosTau6
Intron Retention
Description
Bos taurus cytochrome P450, family 2, subfamily c (LOC511498), mRNA. [Source:RefSeq mRNA;Acc:NM_001075520]
Coordinates
chr26:20896409-20897252:-
Coord C1 exon
chr26:20897092-20897252
Coord A exon
chr26:20896586-20897091
Coord C2 exon
chr26:20896409-20896585
Length
506 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ATTTTTTGTTTTCATTTTAGATT
3' ss Score
10.8
Exon sequences
Seq C1 exon
CTCAGCCCTTTAACCCTGCTGTCACCCTGTCCTGTGCTACCTGCAACATCATCTGCTCCATCCTCTTCAACGAACGTTTCCACTACCAAGATAAGACCCTTCACTCCCTGCTGGATTTGTTAAATGAAAATTTTAATCGAATAAGCTCTCTCTGGAACCAG
Seq A exon
GTAAGGTCAAGTCTCCATTTAACCTTGCACTTGACCTCTTGGGCACACTGGGAGCCCACAAGCAGGATAAAGAGCTGCAAGCTGCCCACCTTGTCCCATGAGCATGCGCCAAGGCAAGCACCGCCCCCGTCCCTCATGTGTGGCTTATGTCAAGTGGATTAGTATAGTGTCACTCAGACCAGCACCTGTGAAGGCTGCCTTCTGCTCGCTTCTGTGAGGTGATTCCCTCAAAAGAAGACGTCATGTCCCAGTCCCCTGCATTTCTTTTAAGGCTCCTGTGCACATTCTCCCCCTCTTACTCTGAGGTTGGCTGAGGGTGGTTGAGCAGGAGATGAGAAGGGGCGACTCTAGTGTATGTGACGGTCATCCTCCCTTCTCTTTAGCTTGAAAGCTGGAGGAAGGGATTCTCCCTGGCCAGACCCTGCAGAGAGTTCGGTGCTCCACTTAGAAACCCTGGTGTCTCTTCACAAACTGAATTGCTTGTGTATTTTTTGTTTTCATTTTAG
Seq C2 exon
ATTTACAATCTATGGCCAAAACTCATAAAGCCTCTCCCTGGAGAGCACAGAGCATTTTCAAAAAGGCTTAAGGATGTTCACTACTTTGTTCTGGAAAAAGTGAAGGAGCATCAAAAGTCCCTGAATCATAATAACCCTCGAGACTACATTGACTGTTTCCTCAGCAGGATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023939:ENSBTAT00000032930:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCTTTAACCCTGCTGTC
R:
CTGCTCCATCCTGCTGAGG
Band lengths:
336-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]