RnoINT0044316 @ rn6
Intron Retention
Gene
ENSRNOG00000013291 | Cyp2c23
Description
cytochrome P450, family 2, subfamily c, polypeptide 23 [Source:RGD Symbol;Acc:620370]
Coordinates
chr1:263789837-263790657:-
Coord C1 exon
chr1:263790497-263790657
Coord A exon
chr1:263790014-263790496
Coord C2 exon
chr1:263789837-263790013
Length
483 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTGCTCGATTTCATTTGTAGATG
3' ss Score
8.55
Exon sequences
Seq C1 exon
CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATTCTTTTCAACGATCGATTCCAGTACAACAACAAGACGTTCCTCAACCTTATGGATCTTTTAAATAAAAATTTTCAACAAGTGAACTCCGTGTGGTGCCAG
Seq A exon
GTAAGACCTGGGTTCTACCTGTGTTTGTCACGGTCCTCACTGCTCTACTGGAAGCCTACTGCACAGTAAAAGGCTCTGGGTTCCCTTGACCTATGAGCATGGCGTCCTTCCCTCGGTGTGCGGAGTAAATGAGTAGCATCTAACGCAGCGACTGGGGAAGTTTGCCCTCTCTGCTTGTTCCAACTGGTCTGTTGGAAATGCGGCTCAGTCTAGAGTCTTGCCTAATGTTTGTGAGCGATGCCCTGCATTGCAAACTAAAGACAGAAAGGAGGAAGGGATCCCAGAGGGGCTTTCCCAGTCACTTCCATGACGGCACATTTCCACTCCCTGATTCTGGGCTTGAGCAGAGGTGGGACAAGCCATAGACGGGAAAGACACTCCCCCTTGCATGGTGCTTACCCTCTCCCCTTCCGTTTGCTAGCCACACCACCCCTCACAGAGGAATTACCGACAGTTTTTGTGTTTGCTCGATTTCATTTGTAG
Seq C2 exon
ATGTACAACCTTTGGCCAACGATCATAAAGTATCTCCCTGGAAAGCATATAGAATTTGCAAAAAGAATTGATGATGTTAAAAACTTCATTCTTGAAAAAGTGAAGGAACACCAGAAGTCCCTGGATCCTGCCAACCCTCGGGACTACATTGACTGTTTTCTCAGCAAGATTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013291:ENSRNOT00000017840:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTTTGACCCCACCTTC
R:
TCCTCAATCTTGCTGAGAAAACAGT
Band lengths:
334-817
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]