MmuINT0044873 @ mm10
Intron Retention
Gene
ENSMUSG00000025197 | Cyp2c44
Description
cytochrome P450, family 2, subfamily c, polypeptide 44 [Source:MGI Symbol;Acc:MGI:1888897]
Coordinates
chr19:44014904-44015826:-
Coord C1 exon
chr19:44015666-44015826
Coord A exon
chr19:44015081-44015665
Coord C2 exon
chr19:44014904-44015080
Length
585 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTGCTCACTTTCATTTGTAGATG
3' ss Score
9.8
Exon sequences
Seq C1 exon
CTCAGCCCTTTGACCCCACCTTCATCCTGGCCTGTGCTCCCTGCAACGTGATCTGCTCCATCCTTTTCAACGAGCGATTCCCATACAATGACAAGACATTCCTCAACCTCATGGACCTTTTAAATAAAAATTTTTACCAACTGAACTCTATATGGATCCAG
Seq A exon
GTAAGACCTGGGTTCTTCCTGTGTGTGGCACGGCCCTCACTGGCCTCCTAGAAGCCTAGGGCACAGTAAAAGGCTCTGGCTTCCCTTGACCCATGAGCATAGCATCCTTCCCTTTGTGCGTGCAGAGTAAATGAATAACATTTAGCGCAGTGACTGGGGAAGTTTGCCCTCTGCTTGGTCCAACTGGTCTGTTGGGAATGTGGCTCAGTCGTAGAGACTTGCCTAATGTTTGTGAGGCCGTGGATTTGATGCCCTGCACTGCAAACTAAAGACAGGAGGGAGGGTGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGTCAAGAAGGGCTTTCCCAGTCACTTCCATTGACAGCCACTCAGTACATCTCCACTCCCTGACTCTGGGGTTGAGCAATGGTAGGACAAGCCATAGATGGGAGGGACACTCCTCTTTGCATGTCACTTACCCTCCCCTCCCTGCCAGCCACACCGGTGACTCCTCACAAGGGCATTACCCATACTTCCTGTGTTTGCTCACTTTCATTTGTAG
Seq C2 exon
ATGTACAACCTATGGCCGACGATCATGAAGTACATACCTGGAAAGCATAGAGAATTCTCAAAAAGGCTTGGTGGTGTTAAAAACTTCATCCTAGAAAAAGTGAAGGAGCACCAGGAGTCCCTGGACCCCGCCAACCCTCGGGATTACATCGACTGTTTCCTCAGCAAGATCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025197:ENSMUST00000026211:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTTGACCCCACCTTCAT
R:
CTCCTCGATCTTGCTGAGGAA
Band lengths:
334-919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types