BtaINT0006080 @ bosTau6
Intron Retention
Description
Bos taurus zinc finger protein 582 (ZNF582), mRNA. [Source:RefSeq mRNA;Acc:NM_001105026]
Coordinates
chr18:63952189-63953324:+
Coord C1 exon
chr18:63952189-63952243
Coord A exon
chr18:63952244-63952484
Coord C2 exon
chr18:63952485-63953324
Length
241 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CACCCCTTACTTTTTATCAGAAA
3' ss Score
6.63
Exon sequences
Seq C1 exon
AAAAGGAAAAAACAAACACATGCTTGTTTTGTTCTTTTTCAGTGCTGAAGTCCAG
Seq A exon
GTATGATACTAAGGTATTCTCTCCAAAGCAGCAGAGTTATGAAGTACAGTCACCCCCGTGGGAGATAATGGAAAGCCTTACCACTTACGGTCTTGAGTGCTCAAGTTTCCAAGATGACTGGGAATGCAGAAGTCATGCTGACAGGGAAGAGGGAAATCCAGATGGACATCTGAGTCAAATGATGATCGAGAATGAAGAAATACCCACTTTCGACCAGCCAGCACCCCTTACTTTTTATCAG
Seq C2 exon
AAAATTCATACGGGAGAAAAACCCTATGGATATAATCAATGTACAAAAGACTTCTGGCAAGAGGACTTCCTTATTAATCATCAAGGGATTCAGACTAATGAGAAGCCCTATAAATGCAAGGAGTGTGGGAAGGCCTTTAAATATGGTTCACGACTAATTCAACATGAGAATATTCATTCTGGCAAGAAACCATATGAATGTAAGGAATGTGGAAAGGCCTTCAATTCTGGTTCAAATTTCATACAACATCAGCGAGTTCATACTGGTGAGAAACCTTATGAATGTAAGGATTGTGCAAAGGCCTTTAGTCGAAGCTCACAGTTGATTGAACATCAACGAATTCATACTGGTGAGAAACCCTATCAGTGTAAGGAGTGTAGCAAGGCCTTCAATCGGATCTCACATCTTAAAGTGCATTATAGAATTCATACTGGTGAAAAACCCTATGCATGCAAGGAGTGTGGGAAAACCTTTAGTCATCGTTCTCAGCTGATTCAACATCAGACTGTTCACACCGGCAAGAAACTCTACGAATGTAAAGAATGTGGGAAGGCCTTTAATCAAGGCTCGACTCTTATTCGACATCAGAGAATTCACACCGGTGAGAAACCCTATGAATGTAAGGCATGTGGGAAGGCCTTTAGGGTGAGCTCACAACTTAAGCAACATCAGAGAATTCACACAGGAGAGAAACCCTACCAATGTAAGGTATGTGGTAGGGCTTTCAAACGGGTCTCCCATCTTACTGTACATTACAGAATTCATACAGGTGAGAAGCCATATGAATGCAGGGAATGTGGGAAAGCCTTCAGCCACTGCTCACAGCTGATTCAACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030348:ENSBTAT00000063919:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGTTTTGTTCTTTTTCAGTGC
R:
TCTCACCAGTATGAACTCGCTGA
Band lengths:
306-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development