BtaINT0008249 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X6J9]
Coordinates
chr13:11402514-11404119:+
Coord C1 exon
chr13:11402514-11402793
Coord A exon
chr13:11402794-11404046
Coord C2 exon
chr13:11404047-11404119
Length
1253 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
3' ss Seq
TATTTATTACATTTTTAATGCAT
3' ss Score
-3.32
Exon sequences
Seq C1 exon
TCATTTTAAAAGAAGAAAAAAAAAAAAAAGAAACTCGTCCTGCAGTCAGCTGACAATTGACCTTTACTCCCAGGCTGCCCCTGCGGGTCCAGGTTCCCCAGTCTTCATGGTGATGCACACGTCAACTTCAGAGTCACAGCTTCTTTGTTCTCATATGTATGCTTGTAGCTCAAGTCACTGTTGCAAAGCACCAGCTCTGGCAGCTGGGCCTCCTAGCTTCTCCCCCACACTCAGAAGCCTTACGTGGAGCCCACGTGTAAGCCTAGATCTTCACGATGAG
Seq A exon
GTGCGGTCGAGGGTCTTATTTATCTTTTCTGCTAGCAGATATCAGTGGGGACCATTTTAGGCTGTCAGAGAGGTTCAAGTCCTCCTGCAGGGATTGAACAGACTTCCTTTTCTCCTTGGTTTCTAGACCTGAACCTCAAGGCAGCTTTCTGTCCTGTGGGGGCACCTTTTCTTAGGTCATAGGTTCCCCGTCATCCTTCCTAGGGTAGTGGCTGCTGGCTCGCCTGAGATTCCAAAATTACGGTTGGCCCCTCATGGGATCTGTTTCCTGTAATAACAAAAATCTTCCAAAGGATTTGTATCTGCCTCCACCTTAAATGTTTTCAGAGTCTGCCTCATAAGGAACCCATTCACCAGATTTAGAAATCCCTAAATCTCAAGTAAGATCGTTGAATTCAGATAGGTAAGCCCTGTCTAGGACTTGCCAGTATCTACTGTAGGAGTAGGAATATGTCTTCCAAGTAAATTGGAGATGATCATGGAGATTAAGCATCATTGTCAGAAAGATCTGCTGGTTCAGAGTCTGAGCAGGTAGAGAAGGAAGAGTAGTGGTCCAGGCCGGGTCTTGATTGTGATTAGCTCTTGGTGTGATTAGCTGCAGTGATGGGGGCTAATTATGTTATCTAATGTGGTGAGTTCATATTTTATAAATAAATTAAGGTACACATTATATAAGAGCTGAGATTCCCTAAATTACAAACCACAAAGAATTAATAACAGTTCGTGCAACCCTTGAATGTTAAATGTATGAAAAAACACAAATTGGGTTTTACTTGGAATTCCAAAGTAGTTCCAGCAATAAAGTTTGAGAACAAATTATTCCAGTCTTTGTTTCTCCAAGCATTTGGGGGGCATATTAGCTCATTAAATTCTCCTTAATCCCCTTGTGAAATAAGGCAGTAAGATCACGGTTGTATAGAGGAAGACTTTGAAGTGAAAAGAAGCAACTTAACCAGGAACAAAAAGCAGCTGGTTACAGAGCTAAGATTTCCAAGTTCGAGAGCGTTTTCATATGCCAGGCTAAGTCTAGTTAATTAACGGAGCTATACTGCCCTCAGTTCATGACTACTTCATCTTCCTTTTCTTTCTCCTTTAAATACATGCTAAATAAAAGTTTATAGAACTTAGAAACTTGAAATGTATGGGACAATTGAAGTTTTGATATTATCTCTGACCTTGTCTGATGATATGATCTAAGAATTTGATGTTGTTTTTCATATTAGTGTTAAAATATTATTTATTACATTTTTAATG
Seq C2 exon
CATAGCATTCGCCAACTGATTTCTGCATATAAAGAAGAGAGACCTAAAACTCCTCCTGAAAATAGCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040046:ENSBTAT00000008040:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.680
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAACTCGTCCTGCAGTCA
R:
CTGGGTTGCTATTTTCAGGAGGA
Band lengths:
326-1579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development