BtaINT0009023 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3N1P6]
Coordinates
chr11:105907335-105907849:-
Coord C1 exon
chr11:105907708-105907849
Coord A exon
chr11:105907411-105907707
Coord C2 exon
chr11:105907335-105907410
Length
297 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
TCAGAGACGCGTGCTTGCAGGGA
3' ss Score
2.63
Exon sequences
Seq C1 exon
GGAAGTCCAGCTCCAAGCGGCGCTCCTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAGGACCTCTTCATCAATGAGTACCGTTCGCTGCTAGCCGATCGCCTGCTGCACCAGTTCAGCTTCAGCCCTGAGCG
Seq A exon
GTGAGGCCTGCGGGGTCGCCCTGCGTCCAGGGAAGGCGTGGCCCTGACTCAGGACAGTTGTCCTCTGTCAGCTCCAGTGTTCAGTGGAGACGAGCACGGTCCCCAGGCGCGGCAGGGACCAGCCTGTGCTCGACCGCTGCCTGGGTGCCTGGGGACGGCCCAAGAACGTGGAGTGGCCGCTCCTGGGGCCCCCGCCTGGCCCCCCGGGCTGGGGGATGGGGGTGCAGGGCGCTGGGTGTCGCCCGCAGGGGCTGGCTGGGGCAGGGGCACTGAGCCCTCAGAGACGCGTGCTTGCAG
Seq C2 exon
GGAGATTCGCAACGTGGAGCTGCTGAAACTGCGCTTTGGCGAGGCCCCGATGCACTTCTGTGAGGTCATGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046223:ENSBTAT00000064659:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(17.0=100)
A:
NA
C2:
PF0088817=Cullin=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTCCAGCTCCAAGC
R:
GCATGACCTCACAGAAGTGCA
Band lengths:
213-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development