RnoINT0017215 @ rn6
Intron Retention
Gene
ENSRNOG00000011295 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:RGD Symbol;Acc:1305546]
Coordinates
chr3:2496442-2497404:+
Coord C1 exon
chr3:2496442-2496583
Coord A exon
chr3:2496584-2497328
Coord C2 exon
chr3:2497329-2497404
Length
745 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
ACAGAAACTTGTCCTTGCAGGGA
3' ss Score
7.01
Exon sequences
Seq C1 exon
CAAAGTCAAGTTCCAAGCGACGCTCTTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAAGACCTGTTTATCAATGAGTACCGCTCCCTCCTGGCCGATCGCCTCCTCCACCAGTTCAGCTTCAGTCCGGAGAG
Seq A exon
GTAAGGCAAGGAACTGGTTGACCTCCAGGGGGTGCTGAGGCCTAAGCCTTCACTTGGAGGAAAGCACATGACTAATATTGACTGCCCCTATTGGCCAAGAGTTGTAGGAATAATTAATCTCTATTGGGGCTTTCTACCCAGTCTTATATCATTCAGTTCTTCTGTTCCCAGATAAAAGAGATTTTATCTATCTAAAACACTAGAGCTGGGCAGATATCAACTCTGTAAGCTATTATGTCTACTTTCTTATTAATAATTCTGAGTTAAACTTGTTGTGTTTCATCTGGGACACTCAACTATTGGCCAGCTCTCACAGCCATGGTATCTTCTCTCCAACTGCTTTTCTCTTTCTTCCTCGCTGTCCTGCCTCATACCCCAAGCCAAGGAACCGCAACCTTGTCTACCTCTCTTCTGCCCAGCTATAGACTGTAGCATCTTTTAATAGTTTTAAATTAAGGAGCAAGGCTACACATATCATCACTTGGTGTACATGAGGATCTCCTCATCCCTGAGACAACCAGACTTTGGGTGGGTGGGTGGGGGCAGTAATTATCATTACAATACATAACAAAGACCAAACCTCAACAGCCAGAATGACCAAACTTTGGCCCTAGTCTTTTGCTTCCTGCTTTCCCTTCAGCCCAGTGTTTCCTGAGCAGGTGGGTTGTCTGGTCCAGCTGTCTGCTTAGGGTATCAGTTGAAATGGAGTCACATTGCAGCCCCTCACAGAAACTTGTCCTTGCAG
Seq C2 exon
GGAGATTCGTAATGTGGAGCTGTTGAAGCTGCGCTTTGGAGAAGCCCCCATGCACTTCTGTGAGGTCATGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011295:ENSRNOT00000015099:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(12.3=100)
A:
NA
C2:
PF0088817=Cullin=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGTCAAGTTCCAAGCGACG
R:
AGCATGACCTCACAGAAGTGC
Band lengths:
214-959
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]