HsaINT0007892 @ hg38
Intron Retention
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
Coordinates
chr9:137180452-137180929:-
Coord C1 exon
chr9:137180788-137180929
Coord A exon
chr9:137180528-137180787
Coord C2 exon
chr9:137180452-137180527
Length
260 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CCAGACACTCGTCTTTCCAGGGA
3' ss Score
6.17
Exon sequences
Seq C1 exon
GGAAGTCGAGCTCCAAGCGGCGTTCATCGGACATCATCAGCCTGCTGGTCAGCATCTACGGCAGCAAGGACCTCTTCATCAATGAGTACCGCTCGCTGCTGGCCGACCGCCTGCTGCACCAGTTCAGCTTCAGCCCCGAGCG
Seq A exon
GTGAGGCCTGTGACGCGCTGGCCATCTCCAGGGGTGCCGGGGCCTTTGCCCAGCCTCTCTCGGGACAGGGCCCTGACGCCGTGCCTGGGGCCTGGTTGGAGCTGTGCTTCCGCCCCCACTCCTGGCTGGGGGTGTGCTAGCCATTGGGGTGCCCACACAGGCTCCCTGCTCTGCCTGGGGGGCACCCCCGTGCCCTGCCACAGGTGCTCCTTGGGGCTGGGGCTCATCACGACCCCCTGCCCAGACACTCGTCTTTCCAG
Seq C2 exon
GGAGATCCGCAACGTGGAGCTGCTGAAGCTGCGCTTTGGCGAGGCCCCAATGCACTTCTGTGAAGTCATGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248:ENST00000323927:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(12.3=100)
A:
NA
C2:
PF0088817=Cullin=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTCGAGCTCCAAGC
R:
CTTCAGCATGACTTCACAGAAG
Band lengths:
218-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development