MmuINT0014916 @ mm9
Intron Retention
Gene
ENSMUSG00000026965 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
Coordinates
chr2:25134692-25135722:+
Coord C1 exon
chr2:25134692-25134833
Coord A exon
chr2:25134834-25135646
Coord C2 exon
chr2:25135647-25135722
Length
813 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACAAACTTTTGTCCTTCCAGGGA
3' ss Score
9.92
Exon sequences
Seq C1 exon
TGAAGTCGAGTTCCAAGCGACGTTCTTCAGACATCATCAGCCTGCTGGTCAGCATCTATGGCAGCAAAGACCTCTTTATCAATGAGTACCGCTCGCTACTTGCAGATCGCCTTCTCCACCAATTCAGCTTCAGCCCTGAGAG
Seq A exon
GTAAGACAAGGAGCTGACCTCCAGGGGGCGCTGAGACCTAAAGCCTTCATTCTGTATTTGGGGAAAAACAAATGACTAGTACTGCCCCTATTGGCCAAATGTTGTGGTAATAATTAATCTTAATTGGGAGTTTCTACCTCATCTTATATCATTCAGTTCCCAGATAAAAGACATACAACACACACACACACACACACACACACACACACACACAGAGTCTTTAAAACACTAGAGCTGGGCAGATGTCAACTCTCTAAGCTATTATGTCTACTTCCCTATTAATCATCGTGAGTTATAACTTGCCATGTTTTATCTGGGACATTCTTAACTACTATTGGCCAGCTCTCATGGCCATGTTTTTATGATTCATCTGGTATCTTCTCCCCACCTCCTCCTCTCTTCCCGCCTCATGGTCCTGCCTCAGACTCCGAGCCCAGGAACTGAAACCTTGTCTACCCCTCTTCTGCCCAGCTATAGGTCATAGGCATCTTGTATTCAATAGTTTTAAGTTAACAAGCAAGGCTACTTATCACCCGTGTTTGTGAGTATCTCCTCATCCCCGAGACAACACAACACAATACATACATACATACATACATACATACATACATACAATACGTAACAAAAGACCAAACCTCAAGCAGCCAAAACGACCACACTCTGACCTTAGTGTTGTGCTTCCTGCCTTCCCTTCAGCCCAGGGTATCCTGAGCGGGTGGGTTGTCTGGCCCAGCTGTCTGCTTAGGGTACTGGTTGAAATGGAGTCATAGTGCAGCCCCTCCCAGAAACAAGGACAAACTTTTGTCCTTCCAG
Seq C2 exon
GGAGATTCGTAATGTGGAGCTGTTGAAGCTGCGCTTTGGTGAAGCCCCCATGCACTTCTGTGAGGTCATGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026965-Anapc2:NM_175300:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(12.3=100)
A:
NA
C2:
PF0088817=Cullin=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTCGAGTTCCAAGCGAC
R:
AGCATGACCTCACAGAAGTGC
Band lengths:
214-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: