BtaINT0009024 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3N1P6]
Coordinates
chr11:105907058-105907410:-
Coord C1 exon
chr11:105907335-105907410
Coord A exon
chr11:105907262-105907334
Coord C2 exon
chr11:105907058-105907261
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CAGGAGGCCCGTCTCCCCAGGAC
3' ss Score
4.41
Exon sequences
Seq C1 exon
GGAGATTCGCAACGTGGAGCTGCTGAAACTGCGCTTTGGCGAGGCCCCGATGCACTTCTGTGAGGTCATGCTCAAG
Seq A exon
GTAGGCGCCCGGGCTCCACGCAGCCGCCTGGTCCCCGCCCCCGCCCAGACCCTCAGGAGGCCCGTCTCCCCAG
Seq C2 exon
GACATGGCGGACTCGCGCCGCATCAACGCCAACATCCGGGAGGAGGACGAGAAGCGGCCCGCCGAGGAGCAGCCGCCCTTCGGAGTCTATGCCGTCATCCTGTCCAGCGAGTTCTGGCCGCCCTTCAAGGACGAGAAGCTGGAGGTCCCCGAGGACATCAGGGAGGCCCTGGAGGTGTACTGCCGGAAGTACGAGAAGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046223:ENSBTAT00000064659:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.191
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(9.0=100)
A:
NA
C2:
PF0088817=Cullin=FE(24.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATGCACTTCTGTGAGGTC
R:
CAGCTTCTCGTCCTTGAAGGG
Band lengths:
171-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development