RnoINT0017216 @ rn6
Intron Retention
Gene
ENSRNOG00000011295 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:RGD Symbol;Acc:1305546]
Coordinates
chr3:2497329-2497688:+
Coord C1 exon
chr3:2497329-2497404
Coord A exon
chr3:2497405-2497484
Coord C2 exon
chr3:2497485-2497688
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GATGAGGTATCCTTTCTTAGGAC
3' ss Score
5.11
Exon sequences
Seq C1 exon
GGAGATTCGTAATGTGGAGCTGTTGAAGCTGCGCTTTGGAGAAGCCCCCATGCACTTCTGTGAGGTCATGCTCAAG
Seq A exon
GTAAATACCCAGGACTGCCCCGAGAGTTGTGCCTACCATCACCATTAAGCCCAGGCCGTTGATGAGGTATCCTTTCTTAG
Seq C2 exon
GACATGGCAGATTCCCGCCGCATCAATGCCAATATCCGTGAGGAGGATGAGAAGCGGCCTGTGGAAGAACAGCCACCATTTGGGGTCTATGCCGTCATATTGTCCAGTGAATTTTGGCCTCCCTTCAAAGATGAGAAGCTGGAGGTCCCTGAGGACATCAGGGCAGCCCTGGATGTTTACTGCAAGAAGTATGAGAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011295:ENSRNOT00000015099:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(6.5=100)
A:
NA
C2:
PF0088817=Cullin=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCACTTCTGTGAGGTC
R:
GGGACCTCCAGCTTCTCATCT
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]