MmuINT0014917 @ mm10
Intron Retention
Gene
ENSMUSG00000026965 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
Coordinates
chr2:25280127-25280486:+
Coord C1 exon
chr2:25280127-25280202
Coord A exon
chr2:25280203-25280282
Coord C2 exon
chr2:25280283-25280486
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GATAAGGTATCCTTTCTTAGGAC
3' ss Score
4.73
Exon sequences
Seq C1 exon
GGAGATTCGTAATGTGGAGCTGTTGAAGCTGCGCTTTGGTGAAGCCCCCATGCACTTCTGTGAGGTCATGCTCAAG
Seq A exon
GTAAATACCCAGGACTGCCTCAGCAGTCGCGCCTACCACCACCAGTAGGCCCAGGCTCTTGATAAGGTATCCTTTCTTAG
Seq C2 exon
GACATGGCAGACTCCCGCCGCATCAATGCCAATATCCGAGAGGAGGATGAGAAGCGGCCTGTGGAAGAACAGCCACCATTTGGGGTCTATGCTGTCATATTGTCCAGTGAATTTTGGCCTCCCTTCAAAGATGAGAAGCTGGAGGTCCCTGAGGACATCAGGGCAGCCCTAGACGTTTACTGCAAGAAGTATGAGAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026965:ENSMUST00000028341:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(6.5=100)
A:
NA
C2:
PF0088817=Cullin=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATGCACTTCTGTGAGGTC
R:
GGGACCTCCAGCTTCTCATCT
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types