GgaINT0126151 @ galGal4
Intron Retention
Gene
ENSGALG00000008625 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
Coordinates
chr17:1789817-1790392:+
Coord C1 exon
chr17:1789817-1789892
Coord A exon
chr17:1789893-1790188
Coord C2 exon
chr17:1790189-1790392
Length
296 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATT
5' ss Score
3.64
3' ss Seq
CTGTCCTCTGCCCTCTCCAGGAC
3' ss Score
11.62
Exon sequences
Seq C1 exon
GGAAATCCGCAACGTGGAGCTGCTCAAGCTGCGGTTTGGCGAAGCTCAGATGCACTATTGTGAAGTCATGTTAAAA
Seq A exon
GTAATTGACTTTTGTTGTTTGTTCTTTGCTTTTTTAAAGTCAAGTCTGGGTGCTTTTGCTCACTGGTGAAGAAGAGCGACCACAAAGGGGTCCTTCAGGGAAATGGGGCTATGAGAATCCCAGTGAGGGGGCTGACGTGTGACAGGCAGAAATGCATTGGGGATGGCTGTCCTTCAAGCCCAGTGGGTTGGGTTGTTGGCTGGGGGTGGGTGCTGCGGGGTTGGGGCCTCCCCTTCCCTTCCTGCCTACGCCCTTCTGGATGTTGAAGGGCTCTTTCTGTCCTCTGCCCTCTCCAG
Seq C2 exon
GACATGGCTGACTCGCGACGCATCAACGCCAACATTCGTGATGAGGAGGAAAAGCTCCCGGAGGAGGAGAGGCCGCCGTTCAGCCTCGTGGCCGTTATCCTGTCCAGTGAGTTCTGGCCACCGCTGAAGGAGGAGAAGCTGGAGCTTCCAGAGCAGGTGAAGGAAGCCATGGAAGCCTATTCCAAGAAGTATGAGAAATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008625:ENSGALT00000014053:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.147
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(9.9=100)
A:
NA
C2:
PF0088817=Cullin=FE(26.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATCCGCAACGTGGAGC
R:
AATTTCTCATACTTCTTGGAATAGGC
Band lengths:
276-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]