HsaINT0007893 @ hg19
Intron Retention
Gene
ENSG00000176248 | ANAPC2
Description
anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:19989]
Coordinates
chr9:140074633-140074979:-
Coord C1 exon
chr9:140074904-140074979
Coord A exon
chr9:140074837-140074903
Coord C2 exon
chr9:140074633-140074836
Length
67 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TGACACCGGCTCCTCCTCAGGAC
3' ss Score
6.59
Exon sequences
Seq C1 exon
GGAGATCCGCAACGTGGAGCTGCTGAAGCTGCGCTTTGGCGAGGCCCCAATGCACTTCTGTGAAGTCATGCTGAAG
Seq A exon
GTGGGTCCCAGCCCCGCCCGCTGCCCGGCCGCCCCGCAGGTCCCCCGTGACACCGGCTCCTCCTCAG
Seq C2 exon
GACATGGCGGACTCCCGCCGCATCAATGCCAACATCCGGGAGGAGGATGAGAAGCGGCCAGCAGAGGAGCAGCCACCGTTCGGGGTCTACGCTGTCATCCTGTCCAGTGAGTTCTGGCCGCCCTTCAAGGACGAGAAGCTGGAGGTCCCCGAGGATATCAGGGCAGCCCTGGAGGCTTACTGCAAGAAGTATGAGCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176248-ANAPC2:NM_013366:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(6.5=100)
A:
NA
C2:
PF0088817=Cullin=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAATGCACTTCTGTGAA
R:
CAGCTTCTCGTCCTTGAAGGG
Band lengths:
174-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)