BtaINT0009519 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr11:5766501-5768272:+
Coord C1 exon
chr11:5766501-5766604
Coord A exon
chr11:5766605-5768123
Coord C2 exon
chr11:5768124-5768272
Length
1519 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGA
5' ss Score
2.81
3' ss Seq
AACTGGTGTCTTCTTTTTAGAGC
3' ss Score
8.29
Exon sequences
Seq C1 exon
CTTAATTCAAAAGTCAGAAGAAAAGAAGACTGAGGATGATGAAATAACATGGGGAAGTGATGAATTGCCAATAGAAACAACAGACCACGAAGATTCCAATAAAG
Seq A exon
GCAAGAAATTTATTAGCAACTTTTAATCAAAAACAATATATAAAATAAATACGTGAGAATTACAGTTTTCAGAACATATAGATGTTATTTCACTGTAGGTCTACATTATTAGGTTCTGTACATAAAATTAAATCACATACACAGACATCAACGTTCATTTATGTGACCAGATTTTTTGCACAGTTGTTAGAATAAAATTGTCAGTGGCTTGGAATAAAACATGTAAATAGATGTATAGACACACAAACAGAAAATAAAAATTTTGCCATCTTGGAATAAGTCAAGGAGCACATTTTATTTATAGCAAAGTAGGAAGAACAGGTCAAAGACAGGAAAATGTTTAAGAGCAAAAGTCAATTGGTCTGTCCTATTACTGCCTCTTTGTTTTAATCTCAGCTAACAGAGCAATAAAGTTCCATCTAGTGTTAAACTTCTCTTTTCTCATGTAAGGAAATGCTATACTAATATAATGAAACAGCATGGTTTTGTAATTTGAAGTCATTGTTGAAAGAAACTTAACAAGTTGAATTAATACTTTTTTGATTTAGGTAGATTGTTGGTATCAAAGGAAATGCTCGAATCCTATAGCCCAGGTTCATCCCTCCAGCCTCTGAGCTCCTGTTGCATTCACACTCAGTCCTGTAAAAGTTTGCAGCTATTTCGTATGATTGAATTTTGTATTCACAACTAGCCTTCACTCCAGACAGACGTTAAGCTTCTTGAGTATCCCCCTGCAGTGCCTGGAATTACTGTCGCTTGCATAGTAGCTGCATCATCAAAATCCTTCTATCAACTGATTGATGTAATTAAAGCTACACTTGTGCAGACTATAGCAAGAAGTCTCTCCTACATTTTTTCCCGGATAACAGTTGTCTTCTGTTATCAGCAGTTTCCATAGCCAGTGCAGATACTAAATTAGACACATACCACTTCCTTAGACACTGATATCACTTATTTGATAAACTTCTAAAGACCCTAAGGATTTCATTTGCATGGAGAAAACTATAAAATGCCAGAGATAGTGGCACCAAGTACCACGGGTGGGTAGAGAGAGGAGAAATCAGTGTTTCCAGGGCAGTGTTCCCTGATAAGGAATTTCTGGAGCATCCCTTCTTCATTTTTCCTCCATGTGCTTGGAAGCCAATTTAAATGCAAAGTAAAAACAGGACTAAATACATTTTTATCAAGTGAACAGTGCCATTTGAGTCCAGAGAAACAGAAACAATTTAAACTCCTTTAGAAACTTTTAAGTAATTGAGAGTCAAGAGCCCTTAAGAACACTGAACATTCAGCAAGGAGTTCCCTTAAAAGTTGGGTACAAGGATCTTGCTATGGCTAGGATTTCCCTTTGTTGACTGTAGATACCTGCCTACCTGTTAATTCTATTGCCTTATTAATTTCAATACTCTCAACTTTTGTAAAAACCAGATGAGGTGAGGATAAGCTCAAATTAGTTCTCTTATTGGCTAAATCAGTTCTGGGGGAATTTTTTTTCAATTAACTGGTGTCTTCTTTTTAG
Seq C2 exon
AGCATCCCTTTCTGACAAATGAGGAACTCACCACACTCCCCATCATCAAAGTGCTTCCCTCCGGGAAATACACTGGTGCCAAGCTGAAGTCAGTCATTCGGATGTTGCGGGGTTTACTCGATCAAGGAATCCCATCTAAGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046971:ENSBTAT00000019901:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGAAGAAAAGAAGACTGAGGA
R:
CAGCTCCTTAGATGGGATTCCT
Band lengths:
239-1758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development