Special

ENSG00000163629 @ hg38

Biotype
protein_coding
Gene Symbol
PTPN13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:HGNC Symbol;Acc:HGNC:9646]
Coordinates
chr4:86594315-86815171:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
+
0.17
3.41
4
Alternative 5'ss
45
chr4:86764680-86764724
+
78.03
55.86
4
Alternative 5'ss
60
chr4:86764680-86764739
+
21.8
55.86
4
Exon Skipping
215
chr4:86769769-86769983
+
95.93
37.74
0
Exon Skipping
99
chr4:86770101-86770199
+
95.93
18.6
0
Exon Skipping
57
chr4:86753009-86753065
+
40.27
100
0
Exon Skipping
88
chr4:86693587-86693674
+
96.35
29.09
0
Exon Skipping
561
chr4:86701241-86701801
+
80.81
47.35
1
Intron Retention
7135
chr4:86751125-86758259
+
5.88
30.27
0
Intron Retention
1792
chr4:86767977-86769768
+
9.93
38.3
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000034573 Ptpn13 1-to-1
Mouse mm9 ENSMUSG00000034573 Ptpn13 1-to-1
Rat rn6 ENSRNOG00000002061 Ptpn13 1-to-1
Cow bosTau6 ENSBTAG00000014947 PTPN13 1-to-1
Chicken galGal4 ENSGALG00000011078 PTPN13 1-to-1
Chicken galGal3 ENSGALG00000011078 PTPN13 1-to-1
Zebrafish danRer10 ENSDARG00000103699 ptpn13 1-to-1