RnoINT0119992 @ rn6
Intron Retention
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7698734-7701623:-
Coord C1 exon
chr14:7701520-7701623
Coord A exon
chr14:7698883-7701519
Coord C2 exon
chr14:7698734-7698882
Length
2637 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
CATCTGGTCCTCTCTGACAGATC
3' ss Score
9.99
Exon sequences
Seq C1 exon
CTTAATCCAGGCATCCCAAGAAGAGAAGCCCGTCAAAGAGGAAGCCACGCAGGAAAGCAGAGAGTCGACAACGGAGACAACAGACCGTGAGGATTCCAGCAAAG
Seq A exon
GCAAGGATTTTAGTTCCGGTTCTTTCATTTAAAACAGCAAGTAGGAAAATCAAAGTTTAAGTGATGATTTCACAATAAATGGATGTATTTGCTGTACATATATGCTCTTTGGTTTTATGCTGTCTTAGTTAGGGTTTTACTGCTGTGAACAGACAACATGACCAAGGCAAGCCTTCTAAAGAACAACAATTGGGGCTGGCTTACAGGTTCAGAGAGGTTCAGTCCATTATCATCATGGTGGCAGCATGGCAGCGTCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGGGCTACATCTTCATCTGAAGGCTGCTAGCAGAATACTGGCTTCCAGGCAGCTAGGATGAGGGTCTTATAGCCCATGCCCACAGTGACACGCCCACTCTGACAAGGCCACACCTTCTAATAGTGCCACTCCCTGGGCTGAGCATATTCAAACCATGACAGATACATAAAGCTAAGTCACAGAGACATCGGCTTTGGTTACCGTAACTAAATTATTTGCATAGCTAGAACCTAAAGCTCTCAGTGGCTTAGAGGAAAGCACAAAGTGTCGTGACTGAAAACGGAAACTAAAAGTCATGATTTTGCTATGGAATAATGAGAAATAAGGAGCTCGCCTTACCTGGAGTAAAACTGATGGGATGACTGAAATGTAAGGGAAAAGTTGTCCTTGACTAATGGCCTTTGCTGGGTGTGCTTGTCGGTCCTTCTACCATTTCTTTTACAACTGAACCAGTGGAGAAACACTAGTGTCTCAGTTAGGGCTTCATTGCTGTGGAGAGGCACCATGAGCAAGGCAACTCTTAATAAAGGGAAACATTTCACTGGGGCTGGCTCACGGTTTCAGAGGTTCGGTCCATTATCATCATGGCAGAAAACACAGCAGTGTCTAGGCAGACATGGTGCTGGAGAGGGAGCTGAGAGGTCTACGTCTGGACCTGAAGGTAGCCAGGAGATTATCTTCCTCAGGCAGCCAGGAAGGAGCTCTCCTCCGCACTGGGCAAAGCTTGAGCATGAAGCCCACAGTGACACACCCCCTCCAACACTGCCGCTTACCACAGCGTATTCAATCCACCACGACCAGTGTTCTCGTTTCCTATTTTTCGATGTCATGTTAATGTCATAAAGGGTGAACTTTTGCTGTCTGAAGTGTGTTCCAGTCGGGTTCTCTACTGCTGTGAGAAAGTGTCTTGACCAAAAGCAGCCTGTGGAGGAAAGGGCGTATTCACCTTACACATTCTGATTACAGTCAGTCACTGAGGGAAGTCAGGGCGGGGAACTCCAGGCGGGACCTGAACCACAGGGCTGCTGCTCACTGGCTTGCTTCTTACTGCTCAGCCCGCTTTCCCACAGAGCCACCTGCCAGGAGTAGCCCTGCCCACCATTAGTTGAGCCCTTATACATCAATCATTAGTAAAGAAAATGCCACACAGACTTGCCTACATGCCAATATGGTGGAGGCATTTTCTCAATAAGTTCTCTGTTCCCAGATAACCCTGCTTGTGTTAAGTGAACAACAACAGCAAAACAAAAAGCCACGAAGCACTAAGTCTCGGTGTTTTTGTTTTTCTTCTGGTTTTGTGAGAGTCTCACTGTGTTCCCCTGGCTCACATAATGCTACATAGGCCAGGCGGGCCTTGAACTCCCAGAGATCAGCCGGGCTCTGCTTCCCGAGTGCTGGGATTAAATGACTGCTTACTGTTTTAAAGGGAACTAATGGCCCGGGTCCTTTTTCTGCTCTGTAGACTGTTGTGCACAGTGCCCCTGTGGGCGTCTCTAGCACCCACTCCTCCATTTAGCTTTCCTGCTCCTATTGTATTCACGTTCTACCTCAGAAAGAGCTAACATATCTCAGATGAGTAAACTGTGGATCCCCACTAACCGTGCCCCAGCCAGACGCTGAGCCTCTTGACAGACCTCGTCCAGCCCTGTGTTGCTCACGGCACTCAGTGTTACTGTCACCTGCATGTTAGCTGCACCACCACCGTGCCCTAACTGCTGGATGAGTTGAGGAATCTCCTACATTGTCTGGGATGGTAATTGCCTTGTGTTATAAATAATCCAGACAGCGGGCACCTACTCAGACCCAGGCTCTTCCAGGGAACCTGTTTAATTGGACTCCTGAATAGCCCAAGAAAAGTACTCTTTGCAGGAAGGGCACTGCCAAATCCAGGATTTCAGCACTGAGGGCCAAGAGTAGGCAGGGAAAAGGGAAGCCCTAGTCTCTAACAACAATCTCCTGATGTGTGGGATTCCTGACCTCTTTTCTCGGTCTTCCCCAGTACTTAGAATCCAGCGCAAAGTAACGGGGAAACTGGATAGGTTTTCCTCATATAAATGATGCCATTAAAGTCAAGCAAAAATGAACGCATGCTCCTTTCAAAAGCAAAACAGCTGGGAGCCACAAACGTTCCAGACCTGTGGTCAGTGGTGAGGCAGCTCCTTCAAGGCTGGGTGAGGTATCTGTGTAGTAGCAAAGCCTGTGTGGGCTGCAGTCATTGGCTAACTGCCAGCCAGCCAGGCTGCTGCCCCTTAGGGTGGGACAGTGGGAGGGAGAACAGGCCCAAGCCTCGAATGTTTATTCATTAAGTCAGCACCAGAGAGAACTGAAGAGCCATCTGGTCCTCTCTGACAG
Seq C2 exon
ATCCCCTCTTTTTGACGAATGAGGAGCTGGCGGCCCTGCCAGTGGTCAGAGTCCCTCCCTCTGGCAAGTACACGGGCACACAGTTGCAGGCCACCATCCGCACGCTTCAAGGCCTGCTTGACCAAGGGATCCCCTCTAAGGAGCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061:ENSRNOT00000061162:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.460
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]