BtaINT0010861 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:62000917-62002278:+
Coord C1 exon
chr19:62000917-62001008
Coord A exon
chr19:62001009-62002099
Coord C2 exon
chr19:62002100-62002278
Length
1091 bp
Sequences
Splice sites
5' ss Seq
GTGGTACGT
5' ss Score
8.61
3' ss Seq
ACCTTTGCTGTTCGATGCAGGTG
3' ss Score
10.29
Exon sequences
Seq C1 exon
GTGAAGTACTGGGACTGCTGGGGCACAATGGAGCTGGGAAGAGCACTTGTATTAAGATGATAACTGGAGACACAAAGCCGACCGCGGGAGTG
Seq A exon
GTACGTGGCGTGGGGGGCAGCCCAGCTCACGGCCGGGGGAATGTCCTGTTCAGTGTCAGTGGCCTCTTCTGTTGTTCTCATCAGTCAGTCAAATGGTTTATGTTTTACTGAAGTATAGCTGATTTAGTGCTGTGCCGATATCTGCCATACAGCAGTGCAGTTCAGTCGCCTGGTCATGTCTGTCCCTTTGCGACCCCGGGGACTGCAGCACACCGGACTTCCCTCTCCAGCAGTGTGACTCAGTTATACACATATATACACTCTTTTTTTTGCCACTCTTTTCCATTATGGTTTATCACGTTGTATATAGTTCCCTGTGCTCCAGCAGGACCTCGTTTAGCCATCCTGTGAATATACTTATATATATGCATATAGTTTGCTTATACCAACCCCAGACTCCCAGTTCACCCTCTCCCTCCCCATGTCCTCCTTGACGATCACAGTCTGCCCTCTATGTCTGTGAGTCTCTAGATAAGTTTATTTGTGCCGTATTTGAGATTTCACACATATGTGCTACTGTGTGATATTTGTTTTTCTCTCTGTGACTGACTTGACTTAGTGAAATAATCTGCAGTTGCATCCACGCTGCTGCGCACGGCGTTCTTTCGTTCCTTTTCGAGGCTGCACATCCATCGTACGTGCGTGCCCCATCCTCTCTGTCTGCTCCTCTGTTGATGGACATGGAGGTTGTCTCCATGTCTTGGCTGTTGTGACTAGCGCTGCTCTGAACATAGGGCTGCAGGTATTTTTTTTTATGATAATTTCATCTGGGTATACGCCCAGGACTGCGATTGCTGGACCACATGGTAATTGTCCTTTATGTTTTCCGAGGAGCCTCCATACTGTCTTCCGTAGTGGCTGCACCAGCTTGCATTCCCACCAGCAGTGTAAGAAGGTTCACTTTTCTCCACACTCTCTCCAGCATCAAATGATTAAAAAAAAAAAAAAAAAGAATAAACAGATGAATTTATAAAACCCCTCTTGCATGCTGAAGAAGGGCTGTGGCTGAATGGTCGTTTCTCCCTCCTTCAGCAGTGGGAGGAGGGTCGAAGCGGCAGGCAGGTGACGCTGACCTTTGCTGTTCGATGCAG
Seq C2 exon
GTGGTTTTCAGGGACAGCGGAACACCTCCGACGCGACAGGCAGGCGGCGGCTTCAGGCATCTGGGGTACTGTCCACAGGAGGACGTGCTGTGGCCCGACCTCACGGTCCGAGAACACCTGGACTTGTACTCGGCCGTGAAAGGCCTGACCAAAGAGGAGGCTGCTCTCAGCGTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937:ENSBTAT00000040376:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.177 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(20.4=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(40.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTACTGGGACTGCTGG
R:
CTGAGAGCAGCCTCCTCTTTG
Band lengths:
262-1353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development