RnoINT0010459 @ rn6
Intron Retention
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98325906-98330443:-
Coord C1 exon
chr10:98330352-98330443
Coord A exon
chr10:98326067-98330351
Coord C2 exon
chr10:98325906-98326066
Length
4285 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CAGTGACCTTTTATCCATAGGTG
3' ss Score
8.41
Exon sequences
Seq C1 exon
GCGAGGTGGTCGGATTACTGGGACACAATGGAGCTGGGAAAAGTACATCCATTAAGATGATAACTGGGGAAATCAAGCCAAGTGCTGGACAG
Seq A exon
GTAGGTAGATGAAAGGTAGTATTTTCTCCAATGGTACCCAGATGACAACTGGAAAAACGTCATTTTTCAAAGTTTTAAAAATATATACTGAATTATAAATTCTCACTTTAAGAGACACAGATACTATACATTTGATTAGAATGTTTTTAAATGTTTTGATAATTTTACATGTATGTAATTTCATTATAATCATCACCCTTTAGCTTTCCTCTTCTCCCCCCCCCTCACATTAAGACCCTTTTTGTTCTCCAAAATCTTCCCTCCCACTTCATGTTTCTTTGTGACCCATTAAACTTCATTAGGGTTGCTTGCATGAACGTGGGCATAAGCCACTTCTCAGTAGCTACACCACTGAAGAAAATGATCCTAGCTCCCTAGCTGCTATTAACCGCCAGTAATCGCTAGGGCCGCCTGTGCTTCTCCACCATCCACGATAAAATGTTGCCAGGGTTAATCATATATAAATCTTGATTAGGTAACTACAGCTGCTGTAAACTCATGAATGTGAAGCCCGTGTCCTATTCAGGAGTTCATGGCTCTCCACCCACATCCGACGCCTTGGCTTTTATCGTCATTTTTGCTTCTTCTGTTTCAGTGTTCCCTGAGCCTTGGAAAGGGCAACATAGATATTCTATTTAGTTCTGAGCACTTAAGAATCACTTAGTGTTCGCACCAGTTATGAATCTCATCCCGTTGCAAAGGGAACTGTTTGACCACGGCTGAGTACATCTCTGGTCTCTGACTGGAAACGTAAATGCTTAGCAGGGATTGGTGAATGCTTTAAAACTGTCCTTTTTCCCATGAGTGTATTAAGAAGGAATGTTATTCATCTTTGGGATACTAATTATTATGAAAATATTGACACTCTGTTTATTGGGCCACATAGTCCACTAATTACGATTTTAAATGACCTTTATAATTAATTTCAGCATGCTACTGATCATTCCCATGAAGTGACATCTCCAATTCAGAAATCTTATACAGTCACACCAAAATCTTTTTTGTCCGACTCTGATAAGCTGCTTCTTCGAGTAGCAGAGGGTGGAGGAGCATGTGTGTAAAGTTGAACTGCTCACCAGCTTGTCACTTGTCTCAGACACAAAATGGCCTGGCACAAAGTTCAGAAAAAGTTAGCCGTAAGAGGTGATCCCAGGAGAGAGACAGGTCATTTCCTTTCCCCTCAATTACAGGGCAGAACTGCTTCAGAAAGTGGCCGCAGGGTAGGCAGAGGTCTTTGTAACTATGCCAGAAGAGGGTGTTGGTAATCAAGCTAGAGAGGGGAGAAGAGACAGGAATATAACAGTCACACATTCCAGTGTGCGAGGAAGAGAAACTCATGTGCACAATCCCTCTGAAGCCATGGTAGAGCAGAAAGTCAGAAGTAGGTTTCTGCAATGGCCATGACACAGCCTACCCTAGTAGGACTCCTCAACTCTAGCTACGGATGCCATTGGTTGCCACTCACCACCTTGCTTTAATACTTCAATGACTTGCATGCTCTGTGACTGGGGTTGTCAGCTCTGGCTTGTCCTGCAGGTGCTTCAAGAGTTGTCTTTTATGTCTGCTCTCAATCTCTGTCCCATGCCCATTTTCACTCTACACAATGCTACATCTTCTATCCTCTGAGTTTGGTCAAGGATACATCAAACTCCATCCTTCTACAAGCCTTTGCTCCTGGTCTTTGGCCTTCTACAATATGTTTCTCCCAGCCCTGTCCACAGCTAGTACCTTCCCCTCCCCTGACATGGCCATTCAGCAGGATAATGATCTGAAGGAGGTAAATAGGAAACCCAGTTCAATACAATTTAACTGGTATTGTCTCAAACGTCTAGAGTCTGACCATAAGTAGTTTGTTTTGTGTCATATTTAAGAACAGTACAACTTTGAGACAAAGTTTTCTCATGACGATTGTCAAGATAAAGATTAATTATTGACTTTATAAAAAAATAAAGTCATTAGACAATTATAGTAAGTAAGGTATTTTATTATAGTGTAAAAATATCTTGGGACCTCAGCCATAATGTTAAGATGCAGTAAGTCTGGCATAGTTCTTTTGTCCTTTTCTTTTTAAAACGTGATTAGCAGGGAGAAAGACGGGCACATCCTCGGGACTTGCTGGCAGGACTGCCTTGCCTACTTGGTGAGTTCCAGACCAATGAGAGACCGTGTCTCAAAAACCAAAGTAGGGTCTGAGGAGATAGCTCAGTTAGTAAAGGGTTTGCTGTGCAAATATCTTGCATGAGGTAGAGGGTTAGGGCTGACACTTCAGGTGCTACTTTTATTTCCACACCCATGGAAATAAAATGTGGCAAGCTGGGCTCCCACTCATAGACTCTCAAACAAGCATATGTACGCACTAAGTCTAAAACATTGATCTTTAAAAGCTTTCAAACGGCATTACAATTGGACATCTTCACAAGGCACAAGGCAGGTGCTTGGATAGGCTTCCAAGTGTGAACGATTAAATCATGAGGCTTTTGTGTGTGCTCGCTACGGTCATCATTCTGTGCACCAATTCGAGAGCTCACTCTGCCTGTCTTAATGAAACTGTTGGTTTGGATCAACGCCCCTCTTCCTTTTATGTTTCCCTTTCCAACCTCTGCTGCTCCCCATTCTACTTGTTTATACTGTTGGCTGTGAGCTTCACCTTTAAGGGCTGAGCCTATGAACCTCCCCTTTAAGGGCTGAGCCTGTGAGCCTCCCCTTTAAGGGTTGAGCCTGTGAACCTCCCCTTTAAGAGCTGAGCCTGTGAGCCTCCCCTTTAAGGGCTGAGCCATGCCTCCAGCCTCTTTACTTTCTATTGATTCAAGTTTAACTTATTTAAATGGTGTATGTGTATATTAATGAAGTCAGGCAGTGTCTGTCTTCCGTGCCTGCTTTATTTCACATCCCGCATTGTCTTGGTTAGTCAACCTAGACATACTGAGGAAGAGGGACTCTCAACTAAGTAATTGACATCATCAGATTGCACCATGGGCATATGTGTGGGGCATCTTCTTGATTGCTAATTGATGTAGAAAGGCCCAGACCACTCTGGGAAGTTCCACGTTTGGGCGGGTGGGCCTAGGCTCTATAAGGAATGCAACTGAGCAAGCAAGGGGAAACTAAGCTGGTAAGCAGCATTCCTCCATGGCTCCTGCTCCAGTTCCTGCTTTCGGGTTCCTGTCCTGAGTTCCTGCCTTGACTTCCCTCAAGAATGGACAATAATCTGGAAGTGCAGGGCCCCCCAAAACCCTTTCTTCCTCAAGTTGCGTTTGATCAGACTTTTATCAAAGCAATAAAAAGCAGAGCATCTCCTATTTCCTGGGTCTATCCATGTTATCACAGACAAAAGGAGACCTTCACGTCGTAAAGGCTGAATAGTATCCCGTGTGCCTTTAAAACTCCGTTAGTCCTGTAGTGGACATTTGGTTGACTTCTTCTTCTCTATCACAAATAGTGTTACAAGGAACACAGGACCGAGAAGGTCATTTTGATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAGAACGGAAAAACAAAAGAAGCTCTCAATCCCTTTGAAAGCATATACCAGGAAATGGTCTTTCTAGGTCATACCTCAGCCATGTCCTCCCCACCCCCATGCCCTCCACAGGAGGCATAGCGCCATTTTCCATAATTAATTCTACTAATTCCCATTTGCATCCACTGTAGACAACAGTTCCATTTTCTCTGCCTCCTTATTGTTTTAACTTCCTCCTTTTTGATAGTAGCCTTTCTCCTGATGGGAAGCGATATCTCGCAGCTCATTTGTATGTACCTGTTTGTATGTGTGCATGTGTGAGCATCATGTAGAGCCAAGAGGTTCATGTCGGATGCCTTCCTCAGACCTCCTCATTTCTTTTTTTCCTGAGACTGTCTTCCAGTGAATCTGGGTTTACTCATTTCTGTTGACTGGCTGGTCCGTCATCAGGTCCTGGAGAGCTTTCTGTCACTGTGTACCCAGCTTTGGGGTTATGGGTGTAATGCTGCTGTACCTGGAATGTGGGTGTTGGATTGGATTCTGGTCCTCGAGCTTATACGGCTAGCACTTTCTCTAGCCATTTCTCCAGTCCCTTGTCATGGTTTTTAATTTGTATTTCCCTGTGGATCCTTCTCTAATCTAAGTGAATGTGGCACCTTTGCATGCACTTGAGCCTGTGTATTGGTTCTCGGGGTGAATCCTTCTACCTTTCTCAGATTATCACTGAAGTCCATAACAGAAGTACTTTGGGGAACAGTAAAGAGTTTGGGCCCTGACAGTGACCTTTTATCCATAG
Seq C2 exon
GTGCAGCTGAAAGGGAACAGCACAGGGGACACCCCGGAATTCCTAGGGTACTGTCCTCAGGAAAATGCTCTGTGGCAACACATGACTGTGAGGGAACACCTGGAGATATTTGCCGCCATAAAGGGGATGAGCAAAAGCGATGCTGCCGTGGCCATTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147:ENSRNOT00000005665:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(21.3=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(37.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]