BtaINT0011244 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62143511-62147470:+
Coord C1 exon
chr19:62143511-62143602
Coord A exon
chr19:62143603-62147309
Coord C2 exon
chr19:62147310-62147470
Length
3707 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GAATGACCTTGTCTCTACAGGTG
3' ss Score
9.7
Exon sequences
Seq C1 exon
GGGAAGTCATAGGGCTCTTGGGACACAACGGAGCTGGTAAAAGCACAACCATCAAGATGATAACTGGAGACACAAGACCGACCGCAGGGCAG
Seq A exon
GTGAGTAAACACTCGGAAATACGCTCGTCAGTGCTGCCAGAAGAAGCGTTCCCAGTGACTGCAGATGCCAATCTCAAAAATACATATCTGGTCCTTTCTTATTAATCATTCTTATTTATGCATTGAATGAAGAGGATTAATGAAAAATGTCTCCCCTTAATTCCAAAAATAGTTAGGCACCAAAGCCTATGTGTTATCTATTCTATGCCTTCTACTGAGTGAAAAGTAGACGCACTCACAGGAAACATTTCGGATAAACATGAGCTTTGTTCACGGTCAAAAGTCTTTCTTTTTTTCTTTTTTAAACTTATGTATCCTGAGAATTTGCTGAATCAGACTGCCAAGATCCAGGATTTATTCAGAAAATAGAACTCTTAGATTAGTGGAAAATTGTCCATGTTCCAAAGCAAAAAACCACAATAGTATATGAATACAGTGGGGTGCTGTGCCTGGGCCAAGTTGTGTAAAGTAATGGACAGAGGACTGAAGGATTGCAACTTTGTCTTTTTTGTTGTTCTTTTTTTAATAATATTTATTTATTTATCTGCAATGGCTCTTAGTTGCAGCATCAAACAGGGATTCGGGGATTGAACCTGAAGTTATAGGGCGCAATCCCAGGTTCAGGGATTGAACCTGGGCCCCCCACGTTAGGGGCAGAGTCTCAGCCCCCCGGCCACCAAGGAAGACCCACAGTATCGCACGTCTGGAGGGCAGACGCTGTTGACACTGGTCAGAAGGCGAAGGCCAGAGAGCATGCTCACCACGAGAAGCTGATGGTGCCCTTGGTCTCCCTTGCCCTCTCACTCCTCGGCAGCCAGGGTGGTCCTTAGAAAAATGCGGAAGTGCTCGTGCCATCACCCTGCTTATAACCCCGCAGCCGGACTGCGTGCAGAACCTTCACCGGGGCCGCGAAAGGCCCTGGAGGGTCTGGGCTCCGTTGATGACCTTGGCTCCCACTAGCCTTTGGTGGTCTTCCCACTGTGAGACCCTGGGGTGGACTCTCCCGGGGGCTGGAGCGCTCTGCCCTCGGCTCTTCGAGTGTCTGCTCATCTCCTTCTCATCACTTTAAAATCCACATCCCCAGAGGCCTTTCCCTGTGACACTCGGGGCTAACACCTTTATTGCCCTGAAAGCAATCAGCAGGCGCTGCGATTCACTCATATGGCGTGCTTGCTGATGTGTTTCCTGTTTCTCTCTCTAGACTGAAAGTTCTAGGAGGCCAGGTTAGTGAGGGCTCTCCTCCTCAGTCCCGGGCAGAGACGACACAGCCCTGACGTCTCGGGCCTGCTGTCCCAGGGCAGGCCCCAGTTCCCACTCCCAGCTCCACCTCGAACGGCCTCCTGCACGATTCCAACAAACGAGGCTTGTTTGTTTCCTCATGTGTGAAACAGGACCATCCAGCTGACCCCCCAGTCAGGTCGGGTTTTTCTGAGGCCAAAATAATTTAAAACACAGAAAATGTAAGCACTGGTACACATACCTGTTGTTATTATTATATGGCACGGTATCCGGCCCATAAAAATAATAAATGCATGTATTTATTGATTCCTGTGTTCCAGACTAGTGCTGAGAAGTTTCCATTTACCTTAGTTCAGGATTTCTCAGGTTTGGCCCTGGGGACATGTTGGGGTTTGGAGGGCCAGGATGCTTGTTTTTTATCTTCTCTTTTTTTAAACTTAGAAAATATCTTTTTATTTCACATTGCCAATTAATGATGTTGTGATAGTTTCAGGTGAACAGCAAAGGGACTCAGCCACGCATACACATGTATCCCTTCTCCCCCAGATTCCCCTCCCATCCAGGCTGCCACGTAACACTGAAGAGTCCCCTGTGCTGTACAGCACGTCCTTGTCAGTTATCCACTCTAAGCATAGCCACGTGTGTGTGTCCATCCCAAACTCCCTAACTATCCCTTCCCCCAGCCCATCCCCCTGGCGACCGTAAGTTTTTTTCTGCATCTGTGCGTCTGTTTCTATTTATCAGTTCAGTGCAGTCACTCAGTTGTGTCCGACTCTTTGTGACCCCACGGACTGCAGCACGCCAGGCTTCCTTGTCCATCACCAACTCCCCAAGTTTACTCAGACTCATTTCCATCGGGTCGGTGATGCCATCCAACCATCTCATCCTCTGTCGTCCCCTTCTCCCACCTTCAGTCTTTCTTAGCATCAGGGTCTTTTCCAATGAGTAAGTTCTTTGCATCAGGTGGCCAAGTTATTGCAGTTTCAGCTTCAGCATCAGTCCTTCCAGTGAATATTCAGGACTGATTTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAACAGTCCAAAAGACTCTCAAGAGTCTTCAACACCACAGTTCAAAAGCATCAATTCTTCAGTGCTCAGCTTTCTTCACAGTCCAACTCTCACAGCCATACATGACCACTGGAAAAACCATAGGCTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTCTACTTTTTAATATGCTGTCTAGGTTGGTCACAGGTTTCCTTCCAAGAAGCAAGTGTCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCAAAAAATAAAGTCTGTCACTGTTTCCATTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACTGGATGCCATGATCTTAGTTTTCTGAATGTTGAGCTTTAAACCAATTTTTTCATTCTCCTCTTTCACTTTCATCAAGAGGCTCTTTAGTTCTTCTTCGCTTTCTGCCATAATGGTGGTGTCATCTGCGTATCTGAGGTTTCTGTTTTTAAATTAGTTCATTTGTGTCATTTCTTTTTAGCTTCTACACATAATGTCATACGATATTCCTCCTTGTCTGTCTTACTTCACTCAGTATGACAATCTCTAGGTCCATCCATGCTTTTAAGCCTTTATTCCATTTTGGCACAGTGGTTGGTCAACAGTCTGACACCAGTGTCATTTTGGACCAGATCATTCTTATTATGAAGGGCTGTCCCGTGCATTGTGGGATATTTAGCAGCATCCTTGGCCTCAACCCCCTAGATTCTCCATCAGGACAACACAAGCGTCTCCGTACGGGCCACGTGTCCCCTGGCAGGAGGGCTGGAAAAGACTAGCTTATTTAATCTTCACAATATACTTGTGAAATACCCCGTAATTGTAACAGTTTTAACTTTGGAAAAACAGAGTCTTCAATAAATACCTGCTCCTATGGATGTTTGGATCAGTAAATGAAGTCAAGCATTGGACAGCCAGGCTTACCAGGTGGCTCAGTGGTAAAGAATCTGCCGGCCAATGCAGGAGACAGACTCGGTTGGATCCCTGGATCGGGAAGATCCCCTGGGGGAGGATATGGCAACTCACTCCAGTATTCTCGCCTGGGAAATTCCATGGACAGAGGAGCCTGGAGGGCTAGAGTCCGTGGGGTCACAAAGAGTCAGACACGATTAGTGACTAAACAACAATTGGACAACCAAATAAGCGACTTGAATTCTTTCATGGACTTGGAAGTCCAAACTGTGATAGAGGACCTGTCCTGCAACAGTGTGGAGGGTCTGCCTTTTTGTTTTCAACCATCATTTCCCCAGAGCCAGCGATCACCCGCTCACTTCTGGACTCTTGGCCCTGTGTGAGCAGGAGGACACCACTGAAATAACGCTCAGTGCCTACACACATGGTTTTGGAGGGAATGTGAGAATGACCTTGTCTCTACAG
Seq C2 exon
GTGCTGCTCGCAGGGGGCAGCGGAGGGGTGCCCCCGGGGTTCCTGGGGTACTGCCCCCAGGAGAGCGCGCTGTGGCCCGGCCTGACGGTGAGGGAGCACCTCGAGGTGTCGGCCGCTGTGAAAGGGCTGCAGAGGGCGGACGCCGCGGCTGCTATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896:ENSBTAT00000009067:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(21.3=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(37.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development