RnoINT0010498 @ rn6
Intron Retention
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98420399-98422751:-
Coord C1 exon
chr10:98422660-98422751
Coord A exon
chr10:98420560-98422659
Coord C2 exon
chr10:98420399-98420559
Length
2100 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TCTTTCTTTTGTGTGTACAGGTG
3' ss Score
10.56
Exon sequences
Seq C1 exon
GTGAAGTCCTAGGGCTCTTAGGACACAATGGAGCTGGCAAAAGTACAACCATTAGTATGATAACGGGAGACACAGTACCAACCGCAGGTCAG
Seq A exon
GTCAGTAATACACGTAAGACACGTTCCGTAATGTTCAATAGATCCAACACTTTACAGTGATTCCTCATGACAATCTAAACGTACATTGTTAGTCCTGAATTAATTCTATTGCTAGGAACTGAAGATGACATTAAATTCCTTTCTACTTAATACAAAGGATAATTTTTGAGAAGGGTTGATATTATCACAATAGTGCCCTTGAGTGAGTAAAAAGTAGAGATATTAATGGAATATTATATACATGGTACACACTCACACCATGATACACACACACACACACAAACAAACACACACACACACACACACACACACACACACATTCATGCATAAAGGGATTAGCCCATTGATATGTCTCCTAAGAACTTGGTAGACTGAGTTGTCTCATCCAGCATTACCTTAAAGACTACTGTTAAAATCCAAACCAGTCTTGCTAATGTAGTTGGTCATGAAGCTCCATGGTTAATAACTATTTTCTGCTGTAATTAAATACTACATGCCTCGTGTGAGGTGAGAAACCATGGGTGTCTTTGCAAAGACGACAGCCAGACAAAATTTCTCGTAATAACTAAGACACACCCTTGTCTAATGGTGGGACAATGTCTTCAGGGACAGGAACGATGGCGGCCGCTTCAGGGGCCAGCTACTGGAGATGTGTTGAAGTTTTCAGTGTATCACACTTCTGCTGTGCAGGAGACCCAGAATTTCCTGAGATGACAAACAACTGTCCAGAGTCTGGGATAAAGATCATAAAATGTATATAAATCGCACTCTTGTAGACACCTTGTAGATAAAATGATGGCCAGAAACCAAAGAATTACGAGTTCAGAGGACAATGCTGTTGGTGTATGATCTGAGGTTAGGATTGGAGGGAAAGGTGATGAGGGATTGCTGTAGATGCTACTGATTGCTAAAGAGACGCCATAAATTGCCTTTTGTTTCCATTCTTACCTGATGCAGCTACTGGAACAGTCCTTTAAAAATGGAGACAAAAGCCTCCAGATTAAAAACACTGACCATAGGCCATCCAAATTCTACCATGGCTCCAGAGGCTTAGCCTAAATCAGGGCTGTGCCAACTGCCTTTCTCTGTCTCTCTGCCTCTGGAATCAGCTCTTGGTCTTCTCTCTTCAGGTTATGTGTGCCCCCATGGATAGAGGCGTCTCCAGTGCTTGCCATTTAACTGCACCTGTGGCTTTTACCCACAAGATGCCAGTAGCACCCTTTCCACCACAGATATGGCCACAATTTTGGCAAGCAAACAATGTTTCCTCCAGATAGTGTGAGATGTACCCTGAGGGGGAGGAATGCCCCTTCTCTGAAAACCACTGCCCTACTGGGAAACAGAACACTTAACAAGTGTCCTTTGTTCTGAGCGTCTGGATCAACAAGAGAACTCATGCGATAAGACACCAGCGAAGCCCCCTTCAGTTGCACTGTAATGGTGGATTTAGTCCTAACGTTTAAACTGCAATGGCATGACATAATAATGTGGAACGTTTGCACTTTCTAAATTACTGAGAGATTCAACCATTCCTCCAGAGCTAAATGATTATTTAGCTCTTTAAGCACTTAATGCTTTTCGTGGTAGCACTGCATGCACATCATTCCTGCCCCTACCTCTCCCTCTCCAACTTCTCCCATGTTCCCCTCCACCTCCCAAACTCATAGTCTCTTCTTTTCTCATCACTCATACATGTATATACATGCATGTATACATACATCATACATACACACATATGAAGTGTACATAGTATAGTATACATGTAAGCTACTGAGTCTGTTTAGCATTGTTCATAGACCATGTAGGGTTACACAACCCATGCAGTAGGTCATCCCTGGAGGAAACTGATTTTGCTTCTGTCAACAGCCATTGGCAAGCTGTATCTCTTCATAGGTAGCCGACACCATGGGGATTTTCCCCTATTTGGCTTGGCATGCCAACTGGTATTGTCATTATGGCGTGGTCTTGTTCCAACAATTGTATTTTACTAATGCTCTTACTCTCCGTGTGCGTGAAGAGACCGTCATCAAGTATCTCTTACATGTGCATGCACACGCGGATTTGACTAGAATCTGAGATTTCTTTCTTTTGTGTGTACAG
Seq C2 exon
GTGTTTTTGAAAGGGAGTAGTGGCAGTGCTGCCCTCGGGTTCTTGGGGTACTGCCCTCAGGAGAATGTGCTGTGGCCCAACCTGACCGTGAAGGAACATCTGGAGGTGTATGCCGCTGTGAAGGGGCTGAGGAAGAAGGAGGCTATAGTCACCATCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326:ENSRNOT00000087502:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(21.3=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(37.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]