BtaINT0010907 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003472 | ABCA12
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 12 (ABCA12), mRNA. [Source:RefSeq mRNA;Acc:NM_001191294]
Coordinates
chr2:103543690-103548240:-
Coord C1 exon
chr2:103548135-103548240
Coord A exon
chr2:103543745-103548134
Coord C2 exon
chr2:103543690-103543744
Length
4390 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAG
5' ss Score
5.39
3' ss Seq
AGAACTATCTCCTCTTTAAGGTA
3' ss Score
7.56
Exon sequences
Seq C1 exon
GTATGGTATGATCCAGAAGGCTATCACTCCCTTCCAGCTTACCTCAACAGCCTGAATAATTTCCTCCTGCGAGTTAACATGTCAAAATATGATGCTGCCCGACATG
Seq A exon
GTAAAGTTATTTACATAGGAGCTCCTTGTATTGAAACTCTTGCTACTCTCCATGTGAAAATATACATTAGACCCCATTTTCCTCCCTGTGGCAGCTATTTTATAGTATTTAAACCACAGATCTTTAAAAGGAGTTTGGAAGTAGTAACTACCACCAGATGGAACATTCTGGATAATCCCCTCAATTTCAGGTTAATTTAGCTTCTTAATTTTTTCAGGTTAATTTAGCTTCTTAATTTATCAAGTCAGGATAATAATGCTGACTTTATACTTATTTCTGTTCTTACACCTCGTAGTTATATCTCACAGGAAAACATTTTATAACTATTTACTTGTACATAGGCTAAAAAATAAAGTGATAATGTCAATAAATATTATACACAAATCCAAATGTGAAAACATAACTTTAGAAGTTCTACCAGAAACGAAGTGTTACCATTAATTGAGTACTTACCATAAGGACACATGCTTTGTGTAAAATATTGCTACTACTTAGCACCCTCTCATGATGAGTATTATTGTTTCCTACTATTATTTCTCTGGGAGTCAGAAGTGGGCTTTGAACCCAGGTTTGTTTGGCTCTTGCTGCTTCATTTTCCCAATACTTCTCTATACTCCACAAAGTCTACTTTTGGGGTTTCTCAAGAAGCTTCCACATAGTCTTTTTTTTTTTTTTTAATATTTACTTCTTCATATGGCTGCAGCAGGTCTTGATTGCCCCACATGGGATCTGTTAATTGCAGCATATGGGATCTAGTTCCCTAAGCAGGGATCGAACCTGGGCCCCTTGTATTGGGAGCATGGAGTCTTAGCAAACTGAACCACCAGAGAAGTCCCTTCCACATAGTTTTTTTAAAGGGTTTGGAATTCAAAAAAGGCTGATTTTTTTTTTCTAATTAAATTACTCTCCACTTCATCTTCTTAAGCCTTGCTCAGATTATTTTCCCATACAGATCCCCTAAAATAATAATAAAGATTGATAAAACGGAGTAACATATTTGCTTATCAATAGTTTCTAGCTTAATAAATGGGCTAACAGACTGTTTAAAAAAGGAATGCTGTTGCCTTCTCTTCTTTCTTCTCCCTACTGTCGGGCATAATAGCATGTGCTGGGCGTTCTGGCAATTGTGGAAGTAAACTGTAGAGTCAAATACTCATTCTAGGGACAGAATCTTTCAGAGTGTTCATTTCTGAGAAAACAGTATTTTTCCCCACTGCTTTGACATTTTCCTAGCAGCAGGAACCATGAAGAAAATGACAAGATTGATAGATAGTGCTTAGATCCAGAGCATCAATAAAGAGTGTAGTCCAAAGTGGTAAATTAAGTTAAATGATGAGTAAACCCAGCTGAGTCTAGTGCAACCCGGTCTGAAATACTGTTGAATGTCTGACTTTCACTAGGATGTCTTACTGAGAGCAAAAGGTATTTGTTGCTGTGACAGTATAGGAACCATAGAAATGACTAGGAAGAAACGTTGCAAAGGTATGTAGGGAAGAAAAAGAGACAATGACACTTTGAAGAATCAGCTTTTGAAATCTTTATTCGGGTTTCATTTATTATTCGTGTTCTTTACCAAGATGAAAGCAGTCAGAATCACTCTGGATCCCGGCAGGCTAGTATTTCTAAGTTACAGAGTATAAAGAATTAAGAATTCTGGAAGATAAACTTTATGTATTGACCCTAAAAGGAAATGTTTTTAATTTAAAAGTAAGGCTTAGCTTGAATTACATGTGGAGACTGGTAGTAGTGTGCCTTCTATTTTTTTTATTAACTTTTCTTATATAGGCTTGTGAAAGTGGTAACTTTCTACCCTATCAGTAAGGAGCTTGTTTTCTTTCAAAGAAGAAAACCATGTCACCTTAAAATACTTTTATTATATTGTAATGAGTGTATGGGATATACCATAATAATGTTGTTTTTAAAAATCAGTTCAAATAGCCTCCTGCCACCTCCCCATACCACACGAGCTGTTTTAAGCCATCTTTGTTGGATTCTACATGAATTGAGATTTTGCCTTTAGTTGTAAAATTGATTCTCTGAATTTTAACATGCTAATAAAAACCTTTTAATTAGCTTTGCTTTGCAAGTCAATATCTGTTATATTCATGTGGTTCCCTCTAGTGGTTAATTTAACTTGAAAATTCTGTTTTCCTCCCCTAGAATACAAATTTACTTGTTTTCACTAACAAATGTTGTACAACCAGGCTCTTCTCCAAAAATATTGATACATTGTCCTCTCTACCCTAATGTTTATTCTTATTGCGTTACTAGCATTGGTCAATGGGAAGTTACTCATTTTAGGCTTACAAGTGTAGAAACTACAGAAAATGTGTTATTTTTCATGTATATTGTATATAGGGGGATAATTGAAACTTTGAGGTTTTATTAGAGTCAATAAGCATTCATCGACTAATCACTGTACCCAAGACTGTGCTAGTTGATATAGAATCCACAGAAAAGATGGTAATATAGATTCTAAACTCTGATAACTTGATGTTGCTGCCAAAGATATAGAAAAAAATTGTTTCGGCAGCATTTTTCATATTGGAGTAAATGTATTTGTAAAGATTTCTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCAAGGAAAACTGAGTCTCAGTAAAAGAAAACCCATTAATTTACACAAAAGATAAGAAACATGCATTCCCCCAATGATTTAATTAAAATTATACATCAAATTGATTATTATTGCTGTTAGTTTCTTTGTTTTGCTTTAACTTTTATATATTTTTCTTCAATACAGAACAGTTGCAGATTTTAACCTTAAAACATGTCATAATCTACTTAGTAAAAATTATAAATTTAAGTTAATGGAAAGAATAGAGCTTTAGAATAATCTATATTTGGTACCATGGAACAGTCTTAATATCTAATATAATGAACATATACTATATAAACAGTAAGTGAGAAAGTTCTTGCTCAGCTTTTGACTCTACGGGGAAAAGTACGTAAGAGATATCCTCACTCCTATCCCTACTGTTTCCAAAGTTACTCAGCATAGGCTTTGCCTTCACATGGTGGCCCTTTGCAAGACCTCCCAGCCCATCTGGGCCCTGGCTAGACAGTATCTTCTCGGGAAAGGGAGGCAAGCACTGTGCTACCTAACTCAGAAAATACAACCAACCCTGGGGGGTACAAGTAATCTAGGACTGTATCGGAATTAATCGACTACTTTTCTGGAGCCAGCTAGTTTCTCTGAATCCTTTTGTATCTTTCTGTCTCAATAAAAACCCCTCCAGAAGCTGAAGCTCCCCAACTCTGCTCCTGGTAGAGTTCTAAAGCAGTAGGTATCTTAGAAGCAGTAAAGGAGGAGAAGGGATCCTTTCAGGCTGCAGTATTTCCCTACCATGACCAATGGCACAATGACGGGCGGCGTGGAAAGTGTCTGTTCTTTAGGGGATCCTCATGTAACTGGTCTCCCTTTGACTTGTTTCTTCACATGTCATACATTTCTAAAGTGCCATCATACAAACATACATATTGCCAGATGGAGAGAAGAAACTGGAAAATAATAACTTAAATGTAGTAGATGGGAAGTGTGCTATATATAAAAAGTGTAAATTCTTATCCCTTCCCCCCCAGATTCCAAGCACAATGTGAAAAATGGTTTGGGTTTTTTCCTGTGAGCATTTGAGTGCCATCAGTTGTATGGTATTGATGAGATTGGGGTTGTGGGGCAGAGGGGATCATTTTATTTTATAAAATAATCACCAAAGTAAAATTCTTTTGCAATATTACATATTATTCATATAAATATTGGTATTTATTTTTAAATAAATATTTTTATTGGAGTATACTTGATTTATAGTGCTATGTTAGTTTCAGGTGTATTGTAAAGTGAATCAGTTATATGTATACATATATCCACCCTCTTGTTTTTTTTAAGATTCTTTTCCTATATAGGCCATTACAGAGTACTGAGTACAGTTCCCTGTCTGTGCTATACAGTAGGTTCTTATTAGTTACCTATTTTATACAGTAGCATGTATAAAAATTAGTGTTTTTGATTAACTGAATACATACTAATGAAAAGAACTATCTCCTCTTTAAG
Seq C2 exon
GTATCATCATGTATAGCCATCCTTATCCAGGAGTGCAAGATCAAGAACAAGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003472:ENSBTAT00000004518:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]