GgaINT0049246 @ galGal3
Intron Retention
Gene
ENSGALG00000003553 | E1C7T0_CHICK
Description
NA
Coordinates
chr7:4250827-4253469:-
Coord C1 exon
chr7:4253364-4253469
Coord A exon
chr7:4250882-4253363
Coord C2 exon
chr7:4250827-4250881
Length
2482 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
TTTTCTTTTTGGTTTTGTAGGTA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GTGTGGTATAATCCCGAAGGTTATCACAGCCTTCCAGCCTATCTGAACAGCTTGAACAACTTCATTCTTCGGGCTAATCTGCCAAAAAATGAGAGTTCCAGATACG
Seq A exon
GTAGGTGTCCCTTCACATGAACAGGTAATTTCTCCCCACTGGGGGACTTCAGTGAGGTCATTTTTTAAAATTCCAAATGATGCAGATTCCTTTAAAAACAGCGTTGAGAAACATGAATAAATCACATATTTCATTTGTCTGTGTCAAAGACCCGAGGGAGCTGGAGAGGGAAGACCCCTGCTCCTATGTAAAACACTTGCTTCATCCAAGAAGTGACAACGGTTGCTATTTGATTTATTGCTTCTCGTTATGGTACTTTTGATTGGTGCCTCTTATTTATGCATAGAAAGGCTACTTCAGGTTGTTTGCTGAATGCCCCCCTGACTAATTTTCTGTGACAAATGCTGTCCTTCCAGCCAGGTTGCAGCCATGCCAAGCCCCCTCACCTCAGATACCTGCTGTTCCGGGTGGCAGTGAGATAGCTGAGAGTGTCTCTTGGCTCCTAAGACTACTATTCCTCAGTGATGTGTCTGAATTTAACTATAATGGAGAAGGCATCTGCTGAAGCTTTAAGTGCCATGCCACGAATTCAAGACGCAGCAGAATGCTGATTACAAGTCAAAGCAGCGCATCTCTCTCCCCACCTCCACATATTGATGCACTGCAGCTCCCCTCACAACAAGCAAAAGCGGCGCCTTGGCTCCGCCGCCATCCTAGCAATAAAGGCTTGTGCCTTTGAGACTCACAGGGTGCCCTCGAGGTCAGAAGGTTCAAGCTCTTCTGTATGCACTGCAAGAGCACGTGGCAAAGCTGCAGTCCCTGCCAGGGTGCGGAGAGAGGAGCTTCCAGCACCACGAGCATCCCAAAGCATCTGAATTATTAAGCAGTGATGCTCGCCCCATCTCTGAATTCCCAGCGCATGCGGTAGTGGGAGCAGCAAAGGCTTATGTGAACAGTCAGAAAGTTTTCACAGGGAAAGTTTGGTATCAGCAAAACAGCAATTTTCAATGGGAAAGAATAGCAGCAGTTTTTATTCCATCTGTCCTGCTGTGTATGCGTGTTTTTTTTTTTTTCTGAATGAAATGCTTAGTAGTAAACGAGCAGGCAGATAATTCTCCACTTCCCACTAATGGTCCAATTCATAGAATGGGGGAAGTAAAATGAATGGATGAGGATAGCTCCCCTGGGGTAGTGTAAATCCAGTTTGAAATACAATTGAACAGACGGTCTGCGTGGTACGTCCCTGGCAGCTAAATCTATTTGTTGTTGTGACAAATAAATGACAGTTTAAGAAGCACTGAAAAGGCCAGATAAAAGTGTGTTGTCATTTCAGCAGTTTGAAAGAGGTGCCAGTCCTGCTTTAGTACATTTGACTTAGCATATCTTTAAAAAAAAAAAAATACATAAAGAGCTTTCTACCCTGTCACTAAGCAAGTCATAATAGCTTTTGACTTACGTATATTGTGCTTTCTCTTCTCTCAATCCCAACCAACAAAAAAAGAGTAAGCATTGAAATGGAAATTCTGACTTCTAGCCTAAGCTTCAGCACAGGGAAATGGCTTTATAGTGAAGCATTAGCAGATTAGACAGACGGTATCTCTCTTTCTCCCCCTTTTAGAGAAGGAAAACATTTCCTGGCTGTTTGTGGGGCTCTATCAGCAGCCTCAGATTTTAATTCCATTTTGCTCACTGATGACAAGGCTGAGGATTTTTTACCCCATGGAATGTATTTCCTAGGGGATCTTTCCTTTCGAATCTATTTGCTTGGTTTGGCACCTGGTCGGCTAAAACTGCAGTCTACTCTTAGCTGGCCCTCGTGTCAGAGCGTTCTGTCTTAGGGAAAATAGCCCCAAATACTCCTTCCTTGTACAGCTGCCAAAAGTCAGGCACCAGAGGAGTTTAAATTTCAGAGTTACTGTGTTCTAGCACATCTTTTTGCATTTTATAGCAGCTTGAGGTTCCCCAGCACCCGCTGAGACCTGAGGAATTCATATAGGTGCCTACATCCAGGTGGAGAACCTCATTTTTAGGCATAAAATTTATCTTAAGCCCTTTCCCAGGTGCTGGTCTGACCATGGCTCTGGCCTTCGCTGGAGGTTGGAACTGTCCCAACAGAGCCCCCCAGGTTCCTCCCTGTGATAGTTTTTATGGGCACAGATTGCCTCCGAACAAAGCAATTTCCACTGGTTCCTTTGGACAAAATGTTTTTCTTTGTTTGTCTCAGCTGCATGAGACAAAATTGTTCTTCTCACTGTAGAAGTGTTCTTGCTGAAGTGAATGATGCAGCCCTTAAAGTTGGGCAGGTGCAGAAGCAAAGCCTAGGGTTTGAATTTCATAGCTGCTGAGCATCAAAGTGGAGTCATAGGAAAATTGGGCCTCTCAAAATCCTGCCCAAGGTCACACTGAGATGATAGAGCAAAAACAGCTTTTGGTCTGCTTTTCTTCTCTATTCAGTCCTCTGTATTACTGTCAACCTCAAGAACTGAGGAAAGAAACTTTAAGCTAGCTACTTCTAAAATTTATTTTCTTTTTGGTTTTGTAG
Seq C2 exon
GTATTTTCTTATCAGCTCACCCATATCCTGGAGGACAGAGTCAAGAACAAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003553:ENSGALT00000005620:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]