GgaINT0049246 @ galGal4
Intron Retention
Gene
ENSGALG00000003553 | ABCA12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:HGNC Symbol;Acc:HGNC:14637]
Coordinates
chr7:4223179-4225821:-
Coord C1 exon
chr7:4225716-4225821
Coord A exon
chr7:4223234-4225715
Coord C2 exon
chr7:4223179-4223233
Length
2482 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
3' ss Seq
TTTTCTTTTTGGTTTTGTAGGTA
3' ss Score
10.82
Exon sequences
Seq C1 exon
GTGTGGTATAATCCCGAAGGTTATCACAGCCTTCCAGCCTATCTGAACAGCTTGAACAACTTCATTCTTCGGGCTAATCTGCCAAAAAATGAGAGTTCCAGATACG
Seq A exon
GTAGGTGTCCCTTCACATGAACAGGTAATTTCTCCCCACTGGGGGACTTCAGTGAGGTCATTTTTTAAAATTCCAAATGATGCAGATTCCTTTAAAAACAGCGTTGAGAAACATGAATAAATCACATATTTCATTTGTCTGTGTCAAAGACCCGAGGGAGCTGGAGAGGGAAGACCCCTGCTCCTATGTAAAACACTTGCTTCATCCAAGAAGTGACAACGGTTGCTATTTGATTTATTGCTTCTCGTTATGGTACTTTTGATTGGTGCCTCTTATTTATGCATAGAAAGGCTACTTCAGGTTGTTTGCTGAATGCCCCCCTGACTAATTTTCTGTGACAAATGCTGTCCTTCCAGCCAGGTTGCAGCCATGCCAAGCCCCCTCACCTCAGATACCTGCTGTTCCGGGTGGCAGTGAGATAGCTGAGAGTGTCTCTTGGCTCCTAAGACTACTATTCCTCAGTGATGTGTCTGAATTTAACTATAATGGAGAAGGCATCTGCTGAAGCTTTAAGTGCCATGCCACGAATTCAAGACGCAGCAGAATGCTGATTACAAGTCAAAGCAGCGCATCTCTCTCCCCACCTCCACATATTGATGCACTGCAGCTCCCCTCACAACAAGCAAAAGCGGCGCCTTGGCTCCGCCGCCATCCTAGCAATAAAGGCTTGTGCCTTTGAGACTCACAGGGTGCCCTCGAGGTCAGAAGGTTCAAGCTCTTCTGTATGCACTGCAAGAGCACGTGGCAAAGCTGCAGTCCCTGCCAGGGTGCGGAGAGAGGAGCTTCCAGCACCACGAGCATCCCAAAGCATCTGAATTATTAAGCAGTGATGCTCGCCCCATCTCTGAATTCCCAGCGCATGCGGTAGTGGGAGCAGCAAAGGCTTATGTGAACAGTCAGAAAGTTTTCACAGGGAAAGTTTGGTATCAGCAAAACAGCAATTTTCAATGGGAAAGAATAGCAGCAGTTTTTATTCCATCTGTCCTGCTGTGTATGCGTGTTTTTTTTTTTTTCTGAATGAAATGCTTAGTAGTAAACGAGCAGGCAGATAATTCTCCACTTCCCACTAATGGTCCAATTCATAGAATGGGGGAAGTAAAATGAATGGATGAGGATAGCTCCCCTGGGGTAGTGTAAATCCAGTTTGAAATACAATTGAACAGACGGTCTGCGTGGTACGTCCCTGGCAGCTAAATCTATTTGTTGTTGTGACAAATAAATGACAGTTTAAGAAGCACTGAAAAGGCCAGATAAAAGTGTGTTGTCATTTCAGCAGTTTGAAAGAGGTGCCAGTCCTGCTTTAGTACATTTGACTTAGCATATCTTTAAAAAAAAAAAAATACATAAAGAGCTTTCTACCCTGTCACTAAGCAAGTCATAATAGCTTTTGACTTACGTATATTGTGCTTTCTCTTCTCTCAATCCCAACCAACAAAAAAAGAGTAAGCATTGAAATGGAAATTCTGACTTCTAGCCTAAGCTTCAGCACAGGGAAATGGCTTTATAGTGAAGCATTAGCAGATTAGACAGACGGTATCTCTCTTTCTCCCCCTTTTAGAGAAGGAAAACATTTCCTGGCTGTTTGTGGGGCTCTATCAGCAGCCTCAGATTTTAATTCCATTTTGCTCACTGATGACAAGGCTGAGGATTTTTTACCCCATGGAATGTATTTCCTAGGGGATCTTTCCTTTCGAATCTATTTGCTTGGTTTGGCACCTGGTCGGCTAAAACTGCAGTCTACTCTTAGCTGGCCCTCGTGTCAGAGCGTTCTGTCTTAGGGAAAATAGCCCCAAATACTCCTTCCTTGTACAGCTGCCAAAAGTCAGGCACCAGAGGAGTTTAAATTTCAGAGTTACTGTGTTCTAGCACATCTTTTTGCATTTTATAGCAGCTTGAGGTTCCCCAGCACCCGCTGAGACCTGAGGAATTCATATAGGTGCCTACATCCAGGTGGAGAACCTCATTTTTAGGCATAAAATTTATCTTAAGCCCTTTCCCAGGTGCTGGTCTGACCATGGCTCTGGCCTTCGCTGGAGGTTGGAACTGTCCCAACAGAGCCCCCCAGGTTCCTCCCTGTGATAGTTTTTATGGGCACAGATTGCCTCCGAACAAAGCAATTTCCACTGGTTCCTTTGGACAAAATGTTTTTCTTTGTTTGTCTCAGCTGCATGAGACAAAATTGTTCTTCTCACTGTAGAAGTGTTCTTGCTGAAGTGAATGATGCAGCCCTTAAAGTTGGGCAGGTGCAGAAGCAAAGCCTAGGGTTTGAATTTCATAGCTGCTGAGCATCAAAGTGGAGTCATAGGAAAATTGGGCCTCTCAAAATCCTGCCCAAGGTCACACTGAGATGATAGAGCAAAAACAGCTTTTGGTCTGCTTTTCTTCTCTATTCAGTCCTCTGTATTACTGTCAACCTCAAGAACTGAGGAAAGAAACTTTAAGCTAGCTACTTCTAAAATTTATTTTCTTTTTGGTTTTGTAG
Seq C2 exon
GTATTTTCTTATCAGCTCACCCATATCCTGGAGGACAGAGTCAAGAACAAGTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003553:ENSGALT00000005620:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]