MmuINT0007588 @ mm9
Intron Retention
Gene
ENSMUSG00000050296 | Abca12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:MGI Symbol;Acc:MGI:2676312]
Coordinates
chr1:71314756-71319043:-
Coord C1 exon
chr1:71318938-71319043
Coord A exon
chr1:71314811-71318937
Coord C2 exon
chr1:71314756-71314810
Length
4127 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGG
5' ss Score
7.68
3' ss Seq
GAGCTCTCCCTTCTTTCTAGGGA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GTGTGGTACGATCCGGAAGGCTACCATTCCCTCCCAGCTTACCTCAACAGCCTCAACAACTTCCTCCTGAGGGTTAACATGTCAGAGTACGATGCTGCCCGACACG
Seq A exon
GTAGGGTCCCTGTACAGAGCTGTCTCTAATTATATTCTTTTTTCCACAGCCTTCCATGCAAACACACTCCCTGTATCTGCTTCCCCCGTTGACGGTGGTGCTCTACGGCATCTAAATTAGGGATCTTCAGAGAGGGTTTGGAAATAGTAACTCCTTCCAGATGGAACATTCCAGATGACACCCTTAACTTCAGATTAATTTAGTTTCCTCACTTATCAAATCAGGAGAGTAACACCCCCTTTGTTCTCACTGCTAGCAGTGATGGCTTGTGGAAAATACTTCAGAGCTATTTATTTGTCTGCAGAAAAAAAGCTGACCAGTAAATTAATATTCATAAGTATTCACAGATCTACATATGCAGACAAAAACATTATGAAAAGTATTCAGTTCTCACCCAGTAGCCTGGCTGGCCTGAAACTAATAGAGATCCACTTGCCTCCTCAGTGCTGGGCTTAAAGTTGTGCCACTATACTTAGTTATGAAGTGGTACCACCATACTTAGTTATGAAGACAAAACTTTTAAAACACAAAGTTCTACACTGCATCCAAAGTGGTGGTACCACATACTGAGGATATATGACACATATGTTATGAAAAAAAAAAAAAAAACCTTCCAGTTTGGGTTAACATTACTGTTTGCTCCTACGCTTTCTCCGAGGTGCTAAAGTGGGATTTGAACTCGGGACTCTCTGAGTCCTGCCTGTCCTTTTGCTAATGCTCCAAGCTGTTTATCCAGACTCAGGCAGATCTACTCCAGTTCTATTTCCCCACAGCCCTCCACATCATTTTTGAATAGGACTGGGATTTAAAAGAAGTTGATTTATTTATTTTTTCTAACTCAATTACTGTTCATCAGACCATTTCATCTCCTTGAGCCTTGCTCAAATTATTTTTCCATATGAACCTAAAAAAATAAAAAGAGAGAGAAAAATGAAATAATACATTTTCTGGCCAGGGCCCAGACTCATAACCAGCCTATTAGGAGGGATCGATGACACAAACTGTCTTTTATAAAAGCTGACCCTCCCCCATTTTCCTTCCATCACCCCACCCCTATGCATTCTGGTGTCTGCTTTTGTGCTGATAATTGTGGAAGTAAACTATAGTGTCAGACACTCCCTCTAGCAGCAGTCTTCAGATATCTTCCTTTCAGAGGAAATGGTGTTTTTATCCAACTGTTTTGGCATTTTTTTTTCCCTAGCGGGAGGAACTTTCAAGAAAATAACAAGATGGGTAGTCCTTAGGTATAGCACATTAATAAAGGACAAAGTCAAAAGGGGTCAATGAAACGAAATGGTGACGGAAGCCAGGTGAGTGTAACCTGGATTGAAATGCTGTTGGAAACCCTTCCATTGGGGTGGTTTATTCAGAGCAAAACCATACATTGTGACAGACAATAAAAGCAGAGAAGCTATAGAAATAGCCAGGGGGATATAGCAAAGATACAGAGAGCAGGAGGATGCCACCTTGTCTAAAGGGTTGGCTTCTGGAAACCTGTGTCCTGGTCTCTTCTACAATTAGTCTTCATTACTGAGACTAATATAACTGGAACCACTTGAGATTCCTTCAGGTTTGTTTACCGTTGTGCTTTAAGTTGCAGAAGACAAAAGAATCTGGCAGCATAAAACTTATGCTGACCCTGAGATGAAATTTATTTTTCAATTTAAAAATAAAGCTTAAATAAAGTTATATATAAATTATGGAAAGCATGTCTTCTGTTCCTTGTTAATTTGTCTATTTAAACACAAAAAATGACAACAGTCTGCCCTCTCTGGGAGACATTTTATTCCTTTCAAAGAAGAAATCAAATCTATGTCACTCAAAATATGTGAGTGGGGTCTCCCATGGCAAGAGAACCTAATCCGCCTGTAAAATTCAACCTATTTGCCCTCACCACCTCTTCCTCATGATCCTTCACATGTTTGAAGACATCTTTGAAGGATTCCAGGTGAACTGGGGTTTTTCTTTAGCTGTAAAATTCATTTTTCTCTGAAGCTTAATATGCTAATAAAATATTTTAATTAGCTTTCATTGGTAATGTCAATATCTGTTACATTCATGTGGTTCCCTCTAGTGGTTAACTTCATGTGGAAAAAAATCTGTGTTCTACCTGAAGAATATTGGTTTGCATGTTTCCTCTGACAAATGTTACACTCCTATGTGCTCCTCCCACCGTTTATCGCCTCGGCTGCAATGGGCACAGGAAGCATTTCATTTTAGCTTGATATCTATAGAGACCACAGAAAAATGCCTACTTTTGATGTAGGTTCCATGGAAGGACGATACTACTAGAAACTTTATTTGATTTGCTTTAATAAGCACCCATTGATTGGTCATGCACTAAAGACACAATGCTGGATGCTGGAGGCTATGGGGAGACTTACGATACAGGAGTTCAGTCCTGTTTAATTCCAGGACTCAGAAGAGAGGCAAAGGCAGGCGCATCTGTGCAAGTTTAAGGCCAGCCTGATCTACATGGTGAGTTCCAGGCAACCAGAGTAGAACAGTGAGAGCATATTACAAACAAACGAACAAACAAACAAATAAATAAACAAACAGAAACTATTAATCTTCACAGAAAATAAGAGAAGTAAACTCCCATATAATGTGATTAAAAGACAGAGGTCAAAATGGGTTTGTTGTCGTTGTTGTTGTTTTCTTTGTTTTTGTTTTTGTCTTTGTTTATTTTTTCAAGGTGCCATTTGTCTTAGTTAGGATTACTACTGCTGTGATGAAGCACCATGACCAAAGCAACTCAGAGAGGAAAGGGGTATATGACCTACACTTTCATATTACTGTTCATCACTGAAAGAAGTCAGGGCAGGAATACAAACAGGGCAGGAACCTTTTGGCTGGAGCTGATGTACAGGCCATGGAGGGGTGCTGGTTACTAGCTTGCCCTTCTTATAGAACCCAGGACCACCAGCCCAGGGTTGGTTCCACCTACAATGAATTGGGTCCTCCCACATCAGTCATTGACTAAGAAACTGCCTTACAAGCTTGCCTACAGTCCCATCCTATGGAGGCATTCTCTTAATGGCGATTCCCTCATCTCAGATGACTTTAACTTGTGTCAAGGTGACATAAAACTATCCAGCACACTATTGTTGAGGACTTCAACTTAAAGTGTCATACTCATCTTATTAAATGCTACAAATTTAAGTTGCCTAGAGAATATGTCCAAACATTGCACCCAAGTGTCCCAAAAAAATGTCCTAATATATCTCATACAAGCAGTAAGTAGAAAAGTTCTTGCTCGGTTTATAACTGTTTAGGTGCAGAGGAGACCCACAGTCTCCTGTCCTCCCATTCTTTCCCTCATTTATCTAGACAGCTCAGTTCATATTACAGTTTTTGGGAAACTTGCCTGTCCACTTTTGACTCTGGCCAAGTAAGACCCTTTCAGAAAGGAGAGGAAAAAGCCTTGCTTCCAATTCAGAAAGTATAACCAACTCTGAGAAGTCAATACTTTGTGGTCGAGGTGGAATTAAGTGACTACTAATTAAGTGTGGGTGCAGTGAGAAGCTCTTGGGCTTCCTGAGTTTTGATGGATATGCAACATTGAGATTCCCAGTCCCTACTCTGGTAGGACTTTCAAACAATAAGCATCTTGGAAATAGTAAAAGAGAAAGGAGCATGTTCTCACAAGACCATGCTTCCTGGCCATTGTCATTAACTCAGGAAGGAGGATTAGAATTGTGTTTGATCTAACGAGAGGCTTGTATGATTGATGCCCAGTTGAGTTGTTTATTTAAGTGTATTCTATTTCTGAAGTATGGCTGAAATGCAAATAGGAATGACCAGACAGAAGAACATTAGAAGCAATCATTAGAATGTACTCCAGAGTATGGCATGCACTATATAAGAAGTAGATGTTCTTAGTTTTTTCTAGAATGTTCTACACACAAGTAGACGTTGTTTATTTTCATATTAAGAGAAGACCAGCAATCACAAGAATTTGATGGGATTAAGGATGGGGAAAGCATTATCCTTTAAATAAGAACCTTTGAAGTACAATTCTTTGATTCATCTTGTAAGAAACAAAGCATCATGTATTATTCATGTAAAACTTGATGCTCCTCATTAACTAAATACCACCTAACAGCAGAGCTCTCCCTTCTTTCTAG
Seq C2 exon
GGATCATCATGTATAGCCACCCTTATCCAGGGGTACAAGACCAGGAACAAGCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050296-Abca12:NM_175210:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: