BtaINT0010930 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7460002-7461431:-
Coord C1 exon
chr4:7461298-7461431
Coord A exon
chr4:7460167-7461297
Coord C2 exon
chr4:7460002-7460166
Length
1131 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGC
5' ss Score
9.4
3' ss Seq
AGTTGCTGTATCATTGGCAGATC
3' ss Score
6.74
Exon sequences
Seq C1 exon
AGTCAGGTTACAGCCTGTCCGTGAAGGAACTGATGTGGGACCCACAGAAGGTTCAGGCTGACCTGAAATCCCAATTTGGCTTTGATGACCTTCATGCAGAACGAGTCCTGAATTACTCTGCTGACCTAGACGAG
Seq A exon
GTACGCACGCTCGGCTGCTCTCACGCTTTGGGTTTCTCCCTGAGGGCAACTCTAGAACCTTCTCCTGGGACCTCGGGGCGGGAGTTCCCTTACTGAAATCTGGCTCCTTGGACCCGGTGGGATGCTGCTGTGTCTGACTGTTCTAGAACTGCTCCTTCCCTCTTTCCTTGACACGTGATCCTGCCTCAAACACAGTTTGGATGTAATAGAACACCTCTAGGCAGCAGGGGGACAAGCCAGTCCCCTGAGGGTGGGAGGTTGTGAAGGCCAGTGGGGTCCAGATGGGGCAGAGGGCATGAAAGGACTGCTTTCCAGGCAGAGCGATGCCTGGGGTCTGGGGAACCAGCTGGCTTCACCAGATCAGAGCCTCACTTTCCAAACTGTAAAATCAGGGGCTCTGACCCACTGACCCCTCCAGGCCCCACTAGCAGCTGCTCCTGCTGGTCTGGGAGGCCCTTACCTGCTGACCCTTTAGTCTCTTGGCACATCTGTGGGTGCTTCTGCTTCTCGCAGGGCAGGAGCCAAATACTGTAGCCCTGTCTCCTTCCTGTGCCTGCTCCCCCAGACCCCTTTCCCACCTCCAGATAGGATGACACCATGATTGTTATAAAACTATGTAATAGAGGAACACAGTTCACTCCAACAAGAACATACATGTTTAATAGCATTGTATTAGAGAAACTTCATGTGAAGGTCATTCACAGGAATAAAGGGGGTTTGGTTTCAAAATATTAAGTGATTTCTGACTCAGAACTCTGATCCAACTTCATCCGGCTCTGATACTTAGAAAATGATTTTGGCAAAGCAAATTTGTGAGTCCAAGGTATCAGTTAAACTGGGCCAGCATGTGGGTGCCTTTGGCCCAAGGGAGTGGAGATGAACAGTTTCTGAAATCATCCTGTGTCCTGGAGAAACTGAGATTCTCCTGAAAAGGGTCATCAGCTTACTGCTGCGCTCTGAAGGCCTCCCGTCCAGGTAAATGCATGTGGATAATAGCGCTCTGTCAACTTGTTATGTCTTCAGTCAAACAAATGTCGGAGCTTTTTCTTCGGCAAGATTGTGGTATTATTAGGAGAAAAACATCCCAGGAAAAACACGCTGATTTCTAAATAGTTGCTGTATCATTGGCAG
Seq C2 exon
ATCCCCACAGACGGTTCCCTGGAGCAGATGCTGTGCTCAGCCTTGTCTGGCTCCTCCGAGGATGAAGATGACGGAGAGGGTCGCCCTGCAGACTGTGACCCTCAGTGGTCAGCGGCCAAAGACTACCTGGTCCAAGCGGTCAGCCGGCTGCACCTCTACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531:ENSBTAT00000061018:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTACAGCCTGTCCGTGAAG
R:
CTGTCTGTAGAGGTGCAGCCG
Band lengths:
294-1425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]