MmuINT0007667 @ mm9
Intron Retention
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9162007-9167624:+
Coord C1 exon
chr11:9162007-9162140
Coord A exon
chr11:9162141-9167459
Coord C2 exon
chr11:9167460-9167624
Length
5319 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
AATTTTTATGTTGTTTCCAGATT
3' ss Score
8.26
Exon sequences
Seq C1 exon
AGACCATTTACCACCTGTCCCTGAAGAATATCGTCTGGGATCCCCAGAAAGTCCAGTCTGATCTCAAATCCCAATTTGGTTTCAATGACTTTCAAATGCAACACATCCTGAATTATTCAGCGAAGCTGGAGGAG
Seq A exon
GTATGCACACTTGTCTTCTTCTCATAGCATTGGGCATCCTTTGAGTGACTCTAGAATGTACTCACCCCTCATCCACCCCCATGAATCTGCCTCTCACATCCAACTGCAACCCAAACTTTTAGAGAACATGTGAATTTATGCAGCCTTGTCACCACACCCCAAACAACAATGTATAGTAATTATTTACAGAGTACACACATCAGGTTAGCTATTTTAAGTCACCTGGAAATGAGTTAAACTATATAGGCATAAGTTTGTAGCTTTATACAAATACCATACCATTTCGAATGAGAGAATTTGATGTCTGTGGGCTTTGAAACCTTTGAAGAATCTGAAAATCAATGCTCCACAGAAGTAGAGCGAGAACTGTATATCACTGGGGCAAGCTGGGTAGTGACAGTGGGAGATGGTAGCTAGAAAGGTGAAATCTGCTCCTGAATTTCAAGCTCCTTAGACAAAGTAGCCCCTAGAAATGTCCCTTTCTTTCCTTATCATTTTATCTCAGCACTTAGGTGGTTCAAAAGTGATAGGAACTTGATTACTCTGGGAACCCTCAGCATGAGAATCCAGGCCAGGCCAGGTGGAGATGTGATTTTTCACCAACTAGAACAGCGAGTATAGCTTTAGGCAGGAAAATTAGACTCAGTGGGAGCAGATATGTGGAGGATTCTCCAGGCAAAGAGAAAATGGATATGAGAGGAGATGGGCTAGCCAATATTAAGCCTCAGTTACTAAACTAGAAGAAATAAAGATGTTGTCTTAGCCCACCCTTAGTACATAGTTCACATAGATATTGCTGAGGCTCTGTGGGTGTCTTTTGTTTGTTGAGCCACTTTCTGAAGCTTCAGACAATTTGTGTAGCCGCCTGCGGCCACAATAACTGGATTCCTGAGTGGGAGGTAGGAGCTGTATGGGAGAGAATGATGAGAGGAATAATGGAGGCCAAGACATGTTTCTGTTCAAGGCCCCCAAGTTTACTAAGAGTCTGTGCTTATAAAGAGGGGAGGCCCACGCCCCGCCAATCCATTCTTGGTGCCTGAAGCCAGCCTGTAGGTGATCTACCAGATGCCAGGGGCCTCTCAGCAGGTAGCAGTGTCTTGGAGAAGAGCAGCAGCAGGTGACAGAACAATAGAGCCATCTAAGTCAATGGCTCCACCCCAGGTGGTCTCATACTCAGGGGCAGCGAGGTCAAAGCCAGCCTACTCAAGGCTGGGGGAGGCTACAAATTTGGAGGCCCTTCTACTTTGCAGTTGGTACAAGAACACACACTTGCATCCTTGGTTTGTGAACCTCCTTCTCTCAGATCCCACCTATGTCTATAGGTCTTTTCTTGTAGAAAAGACCTGATACCTCCTTTTGGAGTCTTGGAGTAAGCTGGGGGTAGGATTTAGTTTACTTTACTATGATTTTTCATGTCCCTGTGAGTAACTACTTTCCCCTGATATAGTAGCCATGCTTTGAACATAGTCTTCTAATTCCAAGCTTCTTTTGGAAAAGTCAGTTCATAAATATTTTAAATAGTATTTGGAGAAGAATTCTTTGTGAGGTAATTATGACTAGATAAAGTCATGGGGTGGTTAACTCATGATGACATTGGTGGCTTTATTAGTGAAGGAAGAGACATAAGTGCTACCCTTACCCTGACTGGCCATGAAATATTTGATGCCATGTTCCGATGAAGAATAAGGCCCTCATCAGATGTCAAGAAGAAGCCAGGTCCACATTCTTAGATTTGCTAGCCTCTAGACAATTGAGCTCTGTGAACCCAAGAAGCTCACTGGGTTTAGCCATTTTGTCTACCTCCTGACACACAGTATGGTCTGACCATTTTATGAAATATCTCTATCTTACCTGTTCCATAGCTGCTGTAGTTGAGACACAAAGCCCAAGTAGTCTGTCTTTTAATCCATCCTCTCTGTTTTTATGGCACAATTTTGTCATTATGTTACAATAATAGTCAAGTAAAATGATAGAACTTTTACATTGGAAAGACAATCATTTTGAGTTTACAATTAAATGGAAAATAGGAAAGATCACAATGTAATTATAGATGTGGATATTGTAAGACCCCAACTCAATATGTCTCCCAGACCCCTAGAAACAAAGCCAGCATGAAGCTCTTTGTTCTCTTACCTGGCAGCCTGAGAAGCAGATAACCAATGGATGACCCACCCAGGCACCTGACTTATTGTGTAAGGGACTGACCAGGAATGTTTGCCAAAGATAGCCTGTAACCCCTCCGCCAGAGATGAGCTATAACTCATCACCCCCATTCTTATGATGTTTACTCAGCTTCCCCATCCTTTGTGGAATGTTTGCCAAAGATAGCCTATAACCCTTACGTCAAAGATGAGCTGAAACTCATCACCCCCATTCTTATGGTATTTACTCAGCTTCCCCTTTCTTTGTGGTTTCTTCCCTTAAATACCCCCTCTCCCAGCTACTCGAGGCACCAAGGTCCCCTATCCCTGTGGGGTGCACAGGGTGCATGACTGTGGGCCCAAGAGCTCTTGAAATAAAAAAAAAAATCCTCTTGCAGTTTGCATCAAGACCATTTCTCGTGAGTGATTTGGGGTGTTGCCTCTCCTGAGTCAGAATGTGGGGGAGTCCTCATGTTGTGGGTCTTTCAGATATAAGGTCTTTAGATATAGTACATTATATATATTTTATACCATGTGATTACAGTGCCTATTTCTGCTCTAGCATGAGAACAACTCAAAGCCACACCTAGACATTGCTGTTAGAAGTCCAGCATGAGCCTTCTTGGTCCAAAATCAATGTATCTTCAGTACTACATTTCTTCTGAAGGACAAAGATAGAGAAAAACTCTTTCTTCCTTTAGCCTTCTAGTTCAGTAGCTATTCTTACAAATTAAAGTAAAAGGAATAAAAAAGGCTAGAGAAAACTCAACTTTAACTATGTAGGTATATGCATGGCAGTTGACAAAGACACTGGCCAAGGAGGCAACCTGGTGATTGAGGCTTATACAGCACCATAGTCTAAACACAGAATAGGGTATGGACCTCCACTAAGTGAGGGAAGGAATGGCAGGACAGGGCAGCCTCTAGGTGAGCAGAGCGGGCAGGACAGATTTTTTGTTCTTAGTATGACATCATTTGTGCAAACAGAAGCTTCCTCTATTAAAAAGGAAAATGTCTTCTGGAGTTTTAGATAAGGGAAAAGGTTGGAAGCTTTTCCTGCACCTGCTGACTTTCAGTGTCCATTAGCTCAAAATAACTCCTATGCTAAAGGGGTATGTTTTGGAGTGGTGCAATTTGGGATTTTTCATGCCCTACCCCTTTTATTGCATTTTTCATTGTCCACAGGCTGTCCCTGGTCCCTGCTTATAGTTTCTCCTCTATCTGTAAAGTCAACAGTTTACCAGGATTTATCTTATCCAACTTCTCTGATAGTCTTTTGTATACTGGTTTTGGTAATGAGGGCTTTTGTGATTACATTGAGCCTACTTGATAATTGGGATAATCTATTATTTTGTCAATTTATTGACACTTTAATTCCATTTACTGGTTATTCAACCTAACATGTTCATAAGCCCTGGGGGGCTAGGATGTGAAAACCTAAGGGTTGGTGGGTCTGCTTCCCACTTTTGTAAAACCCATGAATGTCTGTTTTCTATTTGTGTGTTCAGATCTCCTCCATCTCTAGTCTGACTGATGTCAGACTACATTTCCTTGCTTGTTGGAAGCGGGTCACCATACACTGCCCCTGGGCTAAAGTGGGATGTATATTTGCCTTTTATCCTTATATTGATCTTTTTCTGTCTCCACAAAGTGATTCATTGAGTACCTTGTGCTATGGGTTCTCTGTGAGTTCCCTCACTCCAGCCTCAGAGCTCCTATGACTTCTTCAGACTCCAGGGCCTGTCAATGGGAACTTGCTACACAATGATCATTTAGGCACCCACAAGGCCATATCTTTCTAATGTGATACATAACCTTGATATTACTTTCAGTTGGGGGAAAAAACCCTCAAAACAAAACCCCAAGGGGCTTTGTGACTTTGATAGTCATAAGTGAATAATTTTTAGCTGAGTCCTAAAGAAAAGTGTGTGATGAACAAAGAAACTTCATTGTTCCTTGATTATGGCTATTGTCTTAGTCCAGTCTGATGTTGAAATTGCAGAGCTTGGAAGCTATGCCCCAGGAATTCTTTTCTCATAACTCTGGAGGCTGAAAATCTGAGGACAGCGTGCATACCAAGGGACTGTCTGTCTGGTTAAACTCCACCATCTAGTTCTAAGACAGTGTCTTCTCACTGTGCCCTTACACAGTCCAAAGGATGAATGACAAGCTCATCAAACACCCCCTTCATATAAGAACCATTAGTTCTATCATGACAACTACTTCCACATGATCTCATTTTCGCCTGTGCTAATCATCTCTCCATTATTGTGGCAACTGCCTGAGATCTTGATGATCTTAATGGAAGAAAGGTTCATTTGGCTCAGTTTCAAAAGTATCATAGCTTCATTGGCACCATTGTTCTTGGGGTATTAAGTGGGATAATACATCAGTGTGGGAAGCAGCTAGCGAAGGAAGCTATTTACTTCATGGTAGCCTAGAAGCAAGGACAGAAGAAGGGAAGAGGGTCCCATTATCGTGTAGAATAGCATACCCCTGATGATCTGATTTTTCCCTTCTTAGCCTCATCTCCTAAGGTCACCTCCTAATATCATCCCATGGACCTCTGGAAACTACCACATCTAAACTATAGCATACCCCAGAGGCTCTACTCCTTCACATTGTGACCTTGTGGGTCATAGCTTCCATGTAGGCATTTTAAAGCCATGAAAACAGTTCTGATGGTACTACAGTTTTTGTAAGAATCCAGAGTATAGCTCATTTTGCCACACACAATGGTAGAGTAGTTTCAAAGAGTTAATACACAAAAGAGAATTGGTTCAAAATGGTAAAGCAATGTCTAACCAGGATGCAATGTTAATCGTTCTTATTTTGCCTGCTTTTGATAACTACAAAAGACAGCAAAGTACCACTGTTAGTTCAGAGTATCAACTACTGGCTTAGTCTGTGATGGCTTTGGTGGGGGCAATGTTTGACTCAACCATGTATCTTTTCCTGGAGAACTAGCAGCTCCTGTTGCTGTCCCAATGCTAAAATAACAAGCCCTATTTTGTCCTTGACTCTCAGGACAAATAACAGACATTTTGATGATACTTTCCAGTGTTTAATCATGTGAACACATGAGCCTTGACTCCAGCAAGACTGGGGAATTATTTTGAAAGAAAAACATTCAAAGAAAAAGAGCTTCACTTCTAAGTAATTTTTATGTTGTTTCCAG
Seq C2 exon
ATTCCTACACACAGCTTCCTAGAGAGGATGGTATGTTCCATCTTGTCCAACACTTCTGAGGATGAAGCCGAGAGCAAGGGCTACCGGGCAGACTGTCATCCCAAGTGGTCAGCAGTCAAGAACTACATCATCCATGCAGTCAGTTGGCTGAAGCTATACGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668-Abca13:NM_178259:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: