RnoINT0010053 @ rn6
Intron Retention
Gene
ENSRNOG00000025645 | Abca13
Description
ATP binding cassette subfamily A member 13 [Source:RGD Symbol;Acc:1305895]
Coordinates
chr14:89448858-89457082:+
Coord C1 exon
chr14:89448858-89448991
Coord A exon
chr14:89448992-89456917
Coord C2 exon
chr14:89456918-89457082
Length
7926 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGC
5' ss Score
9.12
3' ss Seq
GTTTCTTATGTTCTTTCTAGATT
3' ss Score
9.77
Exon sequences
Seq C1 exon
AGACAGTTTACCACCTGTCCCTGAAGAATATGTTGTGGGATCCCCAGAAAGTCCAGTCTGATCTCAGATACCAGTTTGGTTTCAATGACCTTCAAGTGCAACACATCCTGAATTATTCAGCCAAGCGGGAGGAG
Seq A exon
GTATGCACACTTGTTTTCTTCTATGGCATTGAGCATCCTTAGAGTGACTCTAGAATATATTCACCGCCCCCACCACATGACTTTACCCAAGCAAGTGAAAGATCTGTATGACAAGAGCTTCAAGTTTCTGAAGAAAGAAATTGAAGAAGATCTCAGAAGATGGAAAGACCTCCCATGCTCTTGGATTGGCAGGATTAATTTAGTAAAAATGGCCATTTTGCCAAAAGCAATCTACAGATTCAATGCAACCCCCATCAAAATTCCAACTCAATTCTTCATAGACTTAGAAACAGCAATTTGCAAATTCATTTGGAATAACCAAAAAAAAAAAAACCAAAACCCCAAAACAAAAAAACCAGGATAGCTAAAACTATTCTCAACAATAAAAGCACTTCCTGGGGAATCACCATCCCTGACCTCAAGCAGTATTACAGAACAATAGTGATAAAAACTGTATGGCATTAGTACAGAGACAGGCAGGTAGATCAGTGGAACAGAATTGAAAACCCAGAAACGAACCTATACACCTATGGTCACTTGATCTTTGACAAAGGATCTAAAACCATCCAATGAAAAAAATTAGAATTTTCAAAAATGGTGCTGGTTCAACTGTAGGTCAGCATGTAGAAGAATGCAAATCAATTTATTCTTACCGCCCTGTACAAAGCTCATGTCCAAGTGGATCAGGACCTCCACATAAAACCAGATACACTCAAACTAATAGAAGAGAAAGTGGGGATGAGCCTCAAACACATGGGCACTGGAGAAAATTTCCTGAACAGAACACCAATGGCTTATGCTCTAAGATCAAGAATTGACAAATAGGACCTCATAAAACTGCAAAGCTTCTGTAAGGCAAAGGACACTGTCATTAGGACAAAACAGCAACCAACAGATTGGAAAAAGATCTTTACCAAAAAATACAAAGAACTGAAGAAGTTAGATTCCAGAGAGCCAAATAACTGTATTAAAAATGGGGTACAGAACTAAACAAGGAATTCATAGCTGAGGAATATCAAATGTCAGAGAGGTACCTAAAGAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAGACAACCCTGAGATTCCACCTCACACCAGTCAGAATGACTAAGATAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAGCACTCCTCCATTGTTGGTGGGATTGCAAACTGGTACAACCTCTCAGAAAATCAGTTTGGAGGTTCTTCAGAAAATTGGACATTGCACTACCTGAGGACCCAGCTATGCCTCTTCTGGGCATATACCCAAAAGATGCCCCAACATATAAAAAAGACACGTGATCCACTATGTTCATCGCAGCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCCAGAATGCCCTTCAATAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAATATTACTCAGCTATCAAAAACAATGACTTTATGAAATTCACAGACAGATGGATGGAACTAGAAAATATCATCATGAGTAAGGTAACTCAATCACAGGAAAACGGACATGGAATTCACTCACTGATAAGTGGATATTAGCCCAAAAGCTTGAATTACCCAAGATGCAATCCACGAGCCACATGAAACTCAAGAAGAAGGATGACCAAAATGTGGATGCTCCATTCCTTCTTAAAAAAGGGAACAAAAATATCCATAGGAGGGGATCAGGAGGCAAAGTTTAGAGCAGAGACTGAAGGAATGGACATTCAGAGTCTGCCCCACATGTGGCTCATACATATACAGTCACCAAACTAGGTAAGATGGATGAAGCAAAGAAGTGTAGGATGACAGGAACGGGATATAGATCTCTCCTGAGAGACACAGCCAGAACATGTCAAATACAGAGGTGAATGCTAGCAACAAGCCACTGAACTGAGAACAGGACCCCCATTGGAGGAATTAGAGAAAGACTGAAAGAGCTGAAGGGGCCTGCGGGCCCATAAGAATAACAATATCAACCAACCAGAGCTCCCAGGGACTAAACCACTACCCAAAGACTATACATGGACTGACCCATGGCTCCAACTGCATATGTAACAAAGGATGGCTTTGTTGGGCACCAATGGAAGGAGAAGCCCTTGATCCTGCCAAGGTTGGACCCCCAGTGTAGGGGATTGTCCGGGGTGATGGTAAGGGGGGGTGGATGGGAGGGGAACACCTTTATAGAGAGGAAGGAGGAGGGGTTAGTGTTATGGACAGGAAACCAGGAAAGGGGATAACATCTGAAATGTAAATAAGAAATATCCAATTAAAAGAGAGAGAAAAAATGGGCTACACAGAGAACGGCCTTATCGGGCATCCATGAGAGAAGAGGCCCTTGGCTCTGTGAAGGCTCAATGTCCGAATGTAGGGGAATGCCAAGATGAGGAGATGGGAGGTTGTAGGAGGGTGGGTGGGGGAACAGTCTCAGAGAGGCAGGGGGAGGGGTAAAGGATAGGGGGATTCCAGCGGGGTAATTGGGAAAGGGAATAACATTTGAAATGTAAGTAAAAAATACCCAATATAAAACAAATCGGATACAGAGCTAAACAAAGAATTCTTACTTGAGGAAAACTGAATGCCTGAGAAGCCCCTGAAAAACGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAGACAACTCTGAGATTCCACCTCACACCAGTGAGAATGGCTAAGATCAAAACCTCAGGTGACAAGAGATTCTGTCAAGGCTGTGGAGAAAGAGGAACACTCCTCCATTATTGGTGGGATTGCAAGCTGGTACAACTTCTCTGGAAATCAGTCTGGAGGTTCTTCAGAAAATTGGACATTACACTACCTGGACTCAGCTATACCACTCCTGGCATACACTCAAAAGGCACTCCAACATATAACAAGGACACATGCTCCACCATGTTCATAGCAGCCTTATTTATGGTAGCTAGAAGCTGCAAACAATCCAGATGTTGTTCAACAGAGGAGTGGACATATAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGACTTCATGAACATCTTAGGCAAATTGATGGAACTAGAAAATATCATCCTGAATGAGGTAACCCAATCACAAAACACACATGGTGTGCACTCACTGATAAATGGATCTTAGCTCAAAAGCTCATAATATCCAATATACAATTTACAGACCACATAAAAGCTCAAGAAGAAGAAAGACCAAAGTGTGGATGCTTTAGTATTTCTTAGAAGGGGGAACACAATACTCACAGAGGAAATATGGAAACAAAATGTAGAGCAGTGACTGAAGGAAAGGACATCCAGAGACTGCCACACATGGGGATATGCATCCCACATGCAGTCACCAAACCCAGTCATTATTGGGGATGCTAAGAAGTGCATGCTGACAGGAGCCTGATATAACTGTCTCCTGAGAGGCTCTGCCAGAGCCTGACACATACAGAGGCAGATACTCACAGCCAACCATTGGACTGAGAATGGAGCCCCCAATGGAGGCGTTAGAAAAAGAACTGAGGTAGCTGAGGGGCTTTGCAACCCCGTAGGAAGAACAACAATATCTACCAACCAGACACCTCAGTGCTCCTAGAGATTAAACTGCCAACCAAAAACTACACAAGGAGTGAAGCATGGCTCCAGCAGCATATGTAGCATAGAATGGCCTTGCTTGGCATCATTGAGAGGAGAGGCCCTTGGTCTTGTGAAGGCTTGATGCTTCATTATAGGGGACAAGCGGGACAGAGTGGGTGGTGGGTAGGGGAACACTCTCATGATGGCAGGGGGTGGGGGGATGTGATAGGGGGTTCCGGAGGGGAAACCAGGAAAGGGGATAATATTTGAAATGTAGATAAAGAAAATATCCAATTAAAAATAAAAAGAATGTATCTGGATTTCACAGTCACCTGCAGATCCAAAGTTTGAGATAAAATGTGAATTTGTGCAGTCCCTTGTCACCACACCCCAAACAGTGCATAGTCACTCTTTATAGAGTACTCACATCGTGTTAGCTATTTTAAGTCACTGGAAATGAGTTAAACTATCTAGGCATAAGTTTGCAGCTTTTATACATAATACCATACCCTTTTGAATGAGAGAAGTTAACATTCGTGGGCTTTGGAATCTTTGGAGGGTCCTGGCATCAGTGCTCCATAGGACTAGAGAGACAACTGTATATCAATGGAGCCAGCTGGGTAGTGATGCTGGGGGATGGTAGCTAGGAGCGGGGTTGAAATCTGCCTCTGAACGTCTAACTCCTTAGACATAGCAGCCTTAGGAACGGCCCTTTCTTTCCTTATCACTTTATCTCAGGACTCAGGTGGTTCAAAAATGATATAAACTCGATCTCTCTGGGAACCATCAGCTTGAGAAGCCAGGCCAGACCAGGTGGAGATGTAAGGTTCACCAACTAGACCAGTGAGTATAGCTTTGGGCAGGAAAATTAGACTTAGTGGAGCAGACATGTGGAGGATTCTCCAGGCAAAGAGAAAACTGGTATGAGAGGAGATGGGCTAGCTGACACCAAGCCTCAGTTACTAAACTAGAAGAAATAAAGATGTCGTCTTAGCCCACCCTTAGTATATAGTTCATATGGGTATTGCTGAGGCTCTCTGGGTGTCTTTTGTCTGAAGACCCATTTTCAGGAGCCTCAGACAATTAGGAGGCCCTTCTGCTTTGCAGCAGGTCCAACAGCACACACTTGCATCCTTGGTTTGTCAACCTCCTTTTCTCAGACCCAGCTATAGGGCTTTTCTTGTATACTCAGTGAAGACCCGCTATCTCCTTTTGGAGTATTGGAGTATAATGGGGGTAGGATTTAGCTTACTTTCCTGTGATTTTTCCATTTCCCTGTGAGTAACTGCTTTTACCTGATATATTAGCCTTGCTTTGACCATAGTCCTCTAACCCCAAGTTTTTTTTTGAAAAGTCAATCCATAAATTTTTAAATAGTATTTGGAGATGAATTCTTTGTGAAGTAATTAAGACTAGATAAAGTCATGGGGTGGTTAACTCATGATGACATTTGTAGCTTTATTAATGGAGGAAGAGATTTAAGTGCTACACTTACCCTACCTGGCCAGCTAACACTTGGTGTGATGTTTTGATGAAGAATAAGGCCTTCATCAGATGTCAAGATGATGTCAGGACCACATTCCTAGACTTGCTTGTCTCCAGCCTCTTGAGCTATGTGAACCCAAGAGGCCCAGTGGGTTTAGCCTTTTGGTTTACCACCGTACACTGTGTGATCTAAGCATTTCATGAAGTATAACTATCTTACCTGACTTGAGATTTTGGCTGTCAAAATGTTCCATAGCTGCTGTAGTTGAGACATGAAGCCCAAGTAGTCTGTCCTTTACTCCATTCCCTGTTTTTATGGTGCCGTTTTGTCATTACGTTACAATAATAGTCAAGTAAAATGATAGGACTTTTACATTGGAAAGGCAATCATTCTGAGTTTAACATTAAATGGAAAATAGTCAGGAAAGATCATAATGTAATTGTTGGTGTGGATATAAGTTCTTTGGATATAGAACATTATAGGTACTGCATACCATGTGATTACAGTACCCGTTTCTGCTCCAGTGTGAGAACAACAGCATAGAGCCTGGAAACAGCTCAAAGCAACACCTAGACACTGTTGTTGGAAGTCCAACGTGGGCCATCTTGGTCCAAAACCAATGTCTCTTCAGGATTGAATTTCTTCTGAAGGACCTAGATACTGTTGTAGAGAAAAACGTCCTTCCTTTAGCCTTCTAGTTCAGTGGCTATCCTTACAAGTTAAAGTAAAAGAAAAAAAAAAGGCTAGAGAAACCCAGCTTTCACTATGTAAGTATGCATAGCAGTTGACAAAGACATTGTCGAGGAGGCGACCTGGTGACTGAGGTTTATGCAGGGCCATAGTCTGAACACACAACAGGGTGTAGGCCTTCATTAAGCGAGGGAAACAATGGACAAGACAAGGCAGGTTCTGGTGGATAGAGGTAATCTTGTGCCTCTAAGTGAGCAGAGTGGGCAGGACAGATTCTCTCTTCCTAGTATGACATCATGTGTGTGAATGGAAGCTTGCTCTATTAAACAGGAAGTCGTCTACTGGACTTTCTGATAGGGTGAAGGGTTGGAAGCTTTTCCTGCACTACCGACTACGTCAAAATAACTCCTATGCTAAAGATTTGGAGTGATGCATTCTGGGACTTTTCAACATCTCCCATCCCATGCCTGCGTTATTGAACTTTTCCATTGTCCAGAGGCTGCCATCATCTCTGCTTGTAGTTTCTCCTCTGTCTGGAAAGTCAACAACTTACCAGGATTTGTCTTATCCAACTTCTCTGATAGTCTTTTGCCTACTGATTCTGGTAATGAGGGCTTCTGCAATTACATTAAGCCTACTTGATAATTGGGGTAATCTATTATTTGGTCAGTTGACACCTCAATTCCATCTGTGACCTCAAATTTTACCAGCTATTCAACCTAAAATGTTCATAAGCCCCGAGGGCTAGGATTCGGAAACCTCAGGGTCGGTGGGTCTACTTCCCACTTTTGTAAAGTCTGTGAATTTCTGTTTCCTGTTTGTGTGTTCAGGTCCTCTCCATGTCTAGTCTGACTGATGTCCCTACATTTCCTGTGCCTGTTGGGAGGGGTTACTATATACTGCCCCTGGGCTGAAGTGGGATGTATTTTTATCTTTTATACTTATATCGATCTTTTTCATCTCCACAACATGATTCCTTGAGGACCTTGTGCTATGAGTTTTCTCACTCCAGCCTCAGAGCTCCCATGCCTTCTTCAGATTCTGTGACAGGGCCTGTCAATGGGAGCTTGCGGTCTGCACATACTATGCTGTTTACTACACAGACTGAACATCTAGGCAGCCACATGGCCATATCTTTCTAACGTGATACATGACCTTGATATTACTTTCAGGTGGAAAAAAAATTCTCAAAACAAAACCCCAAGTGGCTCGGTGGCTTTGGTAGTCATATGTGAATAATTTTCATCTGAGTCCTAAGGAAAAGTGCGTAATGAACAAAGGAGCTTCATTGTTCCTTGATTATGGCCCTTGTCTTAGTCCAGTCTGATGTTGAAATTACACAGCTTGGGAGCTATGCCCCAGGAACTCCTTTCTCATAACTCTGGAGGCTGAGAGTCTAAGGGCAGGGTACCAGGGGACTGTCTGGTTAAAGTCCACCATCTAGTTCTATGACCATGTCTTCTCACTGTGCCCTTACACAGTCCAAGAGATGAATGACAAGCTCATCAAACACCCCCTTCACACATCAGTTCTAGCATGACAGCTACTTCCACACGACCTCATTGGCTCCCATGCGAGTCATCTCTCCATGACTGCAGCAGCGGCCTGAGATTTTGATCTCCTTACTGGAAGAAAGGTTTATTTGACTCAGTTTCAGGAGTATCATAGGTTCCTTGGCACCGCTGTTCTCGGGGTATTCAGTGAGATGATACAACATGGTGGGAAGGACGTGATGAAGGAAGCTATTTACTTCATGGTGGCCTAGAAGCAAAGACACGAGAAGGGAAGCAGGTCCCAAAACACTGCAGAAGAGTACACCCCTGATGATCTTATTTTTCCCTGCTAAGCCTCATCTCTAAAGGTCACCTCCTACTATCATACTATGGTCCTCTGGAAACTACCACTTCCAAACTGTAGCGCACACCAGAGGCTCTACTCCATCACATTGTCACCTTGTGGGTGATAGCTTCTATGCTATACCAAAAGGACAGGACCTACTTTTGTCCTTAACTTAGAGGCCTCCTTCAGAACAAATAACCCAGACATTTTAGTGATACCAGTGTTCGATCAGCAGCAGTGGGGAATTATTTTGAAAGGAAAACATTCCAGTAAAACCAGCTTCACTTCTAAGTGTTTCTTATGTTCTTTCTAG
Seq C2 exon
ATTCCTACACACAGCTTCCTAGAGAGGATGGTATGTTCCATCTTGTCCAATACTTCTGAGGACGAAGCACAGAGCAGGAGCTACCAGGCAGACTGTCATCCCAAGTGGTCAGCAGTCAAGAACTACATCATCCATGCCGTCAGTTGGCCGAAACTCTATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025645:ENSRNOT00000035612:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.055
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]