GgaINT0099008 @ galGal3
Intron Retention
Description
NA
Coordinates
chr2:82257405-82259704:+
Coord C1 exon
chr2:82257405-82257538
Coord A exon
chr2:82257539-82259687
Coord C2 exon
chr2:82259688-82259704
Length
2149 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TTTTCTTGTGTCCCTGCCAGATT
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTTTTCAGTATAATCTTTCTCTAGAGGATATTTTGTGGAATCCACATGCTGTCAGAGCAGAACTTGAATCCAGATTCAGTTTTGATGATCTTCACGTTAAGAAACTTTTAAGTTATACAGCACAATTTACAAAG
Seq A exon
GTAAACAACTTGAATAAATGTTTTTCTTTCCTCTGTTTTTATTTCCTGGTGGGAATTCCTGAAGGCATTTTTTTCATGCCTTACAGAAACTATAATAGTATATTTGAAAGGCAGGCAAAAGCATGACTTATTCTACCAGAAGGCAAAGGACTTGGTTGAATGTTACCAGCCAAGCTTTCAACTTGAATCCAATTTTTTTAAGCTTTATTCAGCAGATATTTGCACCACTATATGTGGTTAGCTAGCATCATGACTAATCACTTGAAGCCATCTATGACTAAGGGATTTCTTTTTATATGAAGAATCAAATGATTGAATCAAAAGACTATTTAATAACAATGTTAAATTTTGAATTGCCCCTCTGAACTGTGTTGCCTTATAGAAGTTGCAGTGATGACTTTGTTTCCATTATGATCAAGATAGCAATCACTTTTATTGACAAATCACTTGTTCTGAAATAAATCTATGGGTTGCAAGAAATGAAACAATGTGTAAAGAACAATTCATGTTTTTACTGAAATTACAGACGAAGTTTGTGAAGGTGTGAAGCAGCTATGACACTGCTAAAAGTCCTATCTTAATTCCCTTCAAAATAAATACGTTTAGCATCATCTAGAATTTGTATACACAAACGTTCTGGTAGATCTACTTGTATATATTGTATATATTAATGAATTTATGCTTCTCTGGAGTTACCACTGAGGATGGCAATGTCCTGAGCTTATTATGCAATCCTGCAGAGAATTTTGTCTTACTCTGCAAAACTTTTAAAATAAATCCTAGATTTGAAGTTGCCTGGATTCATTTGACAGCCAGCATTTTTCATCTTTGTTGAGCAAAGAATGCCTGTCTCTTCTGTGTCCATATCAGGACTGTTGATGTACCTTTCTTCTTAGCTGTGCGGTCTTGGTATGAGTGTACTTGACTGATGAGGTGTCTCAGTGGTGTGTCATATTTTGAAGGAAAAATTTCATCTCAGAGAGGGCTTTTGTTTCTCCTGGATCAACATGATCTCCTGTGATGTTCTTTGATCTGTAGAACGCTTGAAACATCTGTTAAATTTCTACGAAAGTCCAGTCTTTGAATAGAGCATGCCAGTAATTGTCAGAAATCTCTTTGCTCTTTACCAGGTTTAGTCTGGAGTTGTTTTTGCAAGCAGTTCATTATAAAAACAGGTGATTTACACAAATGGGTGGATTATATTAACAAATAAAGAAAAATAAACAACAATAAACAAAGCTCCTTTGAATGGCCTTTTAATGACATCACTGATGGCCAGTGTGATCAACTCAACCAAATATTTGACAGCAGCCATGGTAGGCTGTGTAATCCCTGGCCACTCACTTATTAACTGTTTATAGATTAAGCCAATATCTTCATATTGTGTGCTTGTGTTAGGACGCTGGAGGCCCTCAAAAGGTATGAAGAAAGGTACTCAAGCCTGGACAATGTCTGTTCTGAGGACTTCAGTTCTGTATCTAATGTCCAAGGTGGTTTGGTGTCAACACAGCCACAAAACTTTCAGTACATCTAGTTACAGTTGAAAGAGGTTAGGATGGAAAGTACCTCAGAAAGACACTATTAGGAAGATTTAAGATGTACTAAATTATTTTAGAAAGCATTCATAAAATTTATATGATCTAGAATAATAAATCTTTCAGCACTGAATTTAGAAGTCAGGCTATCAGGAGAAAGGTCTGTCCCCTTGGTCACGTTACTGAAATCTACCAACTTTAATTTTAAAATTGTCTGCTGTATGTAATCATTGAGATGGTGTCAGTGTACTGAATGCTTTATACAGCAATAATTTTTATATTTGTGAAGTTGCTCCTTTATAATTATTCCAGTGCAAAATTATAGTGTAGGTATGCTATCTAATTGTCAAGTTATTTCACTGACAACACGGGTGTTGAAGTAGCAACACTGGTGTAGGTACAGGATGAAAATTTCTTGTAGACAAGTCTAGTTATTCTGCCTAGTGCACAGGTATCATAATGGGGCCATGGGGCTCTGCATTTGGGGTACGCAAGAACACTAAGCTGAATTAAATGAGCTTTGATGTTCCTTTTCATTAGATAAGTAAATTGATAGCAGAGATAACACTCAGTAGCTCTCTGACAAACTTATCCTTTTCTTGTGTCCCTGCCAG
Seq C2 exon
ATTCCCACAGGAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013074:ENSGALT00000031002:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF124523=DUF3685=PD(31.1=84.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]