GgaINT0099008 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C1T4]
Coordinates
chr2:79937101-79939400:+
Coord C1 exon
chr2:79937101-79937234
Coord A exon
chr2:79937235-79939383
Coord C2 exon
chr2:79939384-79939400
Length
2149 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TTTTCTTGTGTCCCTGCCAGATT
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTTTTCAGTATAATCTTTCTCTAGAGGATATTTTGTGGAATCCACATGCTGTCAGAGCAGAACTTGAATCCAGATTCAGTTTTGATGATCTTCACGTTAAGAAACTTTTAAGTTATACAGCACAATTTACAAAG
Seq A exon
GTAAACAACTTGAATAAATGTTTTTCTTTCCTCTGTTTTTATTTCCTGGTGGGAATTCCTGAAGGCATTTTTTTCATGCCTTACAGAAACTATAATAGTATATTTGAAAGGCAGGCAAAAGCATGACTTATTCTACCAGAAGGCAAAGGACTTGGTTGAATGTTACCAGCCAAGCTTTCAACTTGAATCCAATTTTTTTAAGCTTTATTCAGCAGATATTTGCACCACTATATGTGGTTAGCTAGCATCATGACTAATCACTTGAAGCCATCTATGACTAAGGGATTTCTTTTTATATGAAGAATCAAATGATTGAATCAAAAGACTATTTAATAACAATGTTAAATTTTGAATTGCCCCTCTGAACTGTGTTGCCTTATAGAAGTTGCAGTGATGACTTTGTTTCCATTATGATCAAGATAGCAATCACTTTTATTGACAAATCACTTGTTCTGAAATAAATCTATGGGTTGCAAGAAATGAAACAATGTGTAAAGAACAATTCATGTTTTTACTGAAATTACAGACGAAGTTTGTGAAGGTGTGAAGCAGCTATGACACTGCTAAAAGTCCTATCTTAATTCCCTTCAAAATAAATACGTTTAGCATCATCTAGAATTTGTATACACAAACGTTCTGGTAGATCTACTTGTATATATTGTATATATTAATGAATTTATGCTTCTCTGGAGTTACCACTGAGGATGGCAATGTCCTGAGCTTATTATGCAATCCTGCAGAGAATTTTGTCTTACTCTGCAAAACTTTTAAAATAAATCCTAGATTTGAAGTTGCCTGGATTCATTTGACAGCCAGCATTTTTCATCTTTGTTGAGCAAAGAATGCCTGTCTCTTCTGTGTCCATATCAGGACTGTTGATGTACCTTTCTTCTTAGCTGTGCGGTCTTGGTATGAGTGTACTTGACTGATGAGGTGTCTCAGTGGTGTGTCATATTTTGAAGGAAAAATTTCATCTCAGAGAGGGCTTTTGTTTCTCCTGGATCAACATGATCTCCTGTGATGTTCTTTGATCTGTAGAACGCTTGAAACATCTGTTAAATTTCTACGAAAGTCCAGTCTTTGAATAGAGCATGCCAGTAATTGTCAGAAATCTCTTTGCTCTTTACCAGGTTTAGTCTGGAGTTGTTTTTGCAAGCAGTTCATTATAAAAACAGGTGATTTACACAAATGGGTGGATTATATTAACAAATAAAGAAAAATAAACAACAATAAACAAAGCTCCTTTGAATGGCCTTTTAATGACATCACTGATGGCCAGTGTGATCAACTCAACCAAATATTTGACAGCAGCCATGGTAGGCTGTGTAATCCCTGGCCACTCACTTATTAACTGTTTATAGATTAAGCCAATATCTTCATATTGTGTGCTTGTGTTAGGACGCTGGAGGCCCTCAAAAGGTATGAAGAAAGGTACTCAAGCCTGGACAATGTCTGTTCTGAGGACTTCAGTTCTGTATCTAATGTCCAAGGTGGTTTGGTGTCAACACAGCCACAAAACTTTCAGTACATCTAGTTACAGTTGAAAGAGGTTAGGATGGAAAGTACCTCAGAAAGACACTATTAGGAAGATTTAAGATGTACTAAATTATTTTAGAAAGCATTCATAAAATTTATATGATCTAGAATAATAAATCTTTCAGCACTGAATTTAGAAGTCAGGCTATCAGGAGAAAGGTCTGTCCCCTTGGTCACGTTACTGAAATCTACCAACTTTAATTTTAAAATTGTCTGCTGTATGTAATCATTGAGATGGTGTCAGTGTACTGAATGCTTTATACAGCAATAATTTTTATATTTGTGAAGTTGCTCCTTTATAATTATTCCAGTGCAAAATTATAGTGTAGGTATGCTATCTAATTGTCAAGTTATTTCACTGACAACACGGGTGTTGAAGTAGCAACACTGGTGTAGGTACAGGATGAAAATTTCTTGTAGACAAGTCTAGTTATTCTGCCTAGTGCACAGGTATCATAATGGGGCCATGGGGCTCTGCATTTGGGGTACGCAAGAACACTAAGCTGAATTAAATGAGCTTTGATGTTCCTTTTCATTAGATAAGTAAATTGATAGCAGAGATAACACTCAGTAGCTCTCTGACAAACTTATCCTTTTCTTGTGTCCCTGCCAG
Seq C2 exon
ATTCCCACAGGAGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013074:ENSGALT00000031002:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]