BtaINT0011060 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49604847-49607456:+
Coord C1 exon
chr3:49604847-49605023
Coord A exon
chr3:49605024-49607233
Coord C2 exon
chr3:49607234-49607456
Length
2210 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
CTTCTCTCCTCTTGCTTTAGTTT
3' ss Score
9.11
Exon sequences
Seq C1 exon
GTACTGGGATTCTGGCCCCAGAGCTGATCCTGTGGAAGACTTCCGATACATCTGGGGAGGGTTTGCCTATCTGCAGGACATGGTTGAACATGGGATCACGAGGAGTCAGGCCCAGGAGGAGGTTCCGGTTGGAATCTATCTCCAGCAGATGCCTTACCCCTGCTTCGTGGATGACTC
Seq A exon
GTGAGTCGGAGGTCCCAGGCCCCCTCCAGGACAAGCTAATCAGGTTTCTGGGGTGGGATGAAGGGGAGGTGCTCCCCAGGCTTCAATCTCTTTGGAGAAAAATCTTTTTGGGTCCTGGGGCCAGCTCGGGGAGAATAGAGCTCTGATTGAGGAATCTGCCCTGCCCCCTCAGCTGCAGGCAGGGCCAGATGGATAAGTAAAGTGGGAAAAAGGAGTTGGTAGAAAAGGGAAGGTGAAAATTAAAGCAGGGAAAGTGAGGCTGGGGGAGGGAACACAGGCTTTTAAAATTTCCACTATGTAATATGTTTGGTATGTGGAAGAGTTCAGGTCAGAGTGTTTGCCCAGTGATTGCCAAAACAGCAAAGTAGGATTCTGCATCACAAGTAGGTCCGGTTCCTAGGAGCCTTGGAATAATGCAGCTCCTTCCCTAATTAGCATTCCCATGATGTGTGCTTCATGAAAAGGTGGAGGGGTGTTGGATGAGCTTGGACCCCCTTTCCTGTCCACCCCCATCCCCAAGCCTGTACATTTGCTGCCCAGTAGCAAGACATGCTAGTATCCTACTGTTTTCTGAACATGCATTTGGGGGTGGAGCAGTAGAGGGAGGGACAAAGAGGAAGAAGGGGCTGGGAGGGCTCATTTACTGTGGTGGGTGGGGGCAGAAATGTCCCAGGACAGGAGCAGAGATCTGCAATTGGCTTAGGGATTCAACTCTTAGAAAAAAAAAAACTGGCAAGTTCACCATAGTGTATATGTGGGTCTGTGGGGTTCAGGGAGGAGAGAAATGTGCACAGCCTGAAGAAAAGAAGAGTCAAATTGCCAGCTGGCCAGGTTGTATAAATAAAACCCTGTATGGGTGTAATACCTTAGTCCAATCAGTTCTTCTTGCTCAGCTCTGCAAAAGACTGAAAGAGATAACAGGGACTGTTCCACAGTCAGTTTAGGGTTGGACAATAGGCAGAGATGGGAAATGGAACCAGGAGCAAAAGCCCAGTTCCACTTTTATGATCAGAATAGAAATGAGTGGCAGGTAGACAGTGAGGAGGCAGGAATTCTGGCCATTCAATGTGGGAGAGCCCTCTGGTGGCAGGTCCCAGAAGGGCGGGCTTTATGAATGTATGATTCTCTTCCTAGGGCCATCTTAGTGAAACTCTCCCACCCTCGAATTGGGCCCTTACTGTGTTACCCAGAAGTTTTCAATAGATAATAACCTCAAGGGCTTTACTATAAAGGTCAAGTGTAGGGAAAACATATGTAAAGTTCCCACTAGAGTAATTCCAGAATACCAAATTTGCCCTGCTTGCTGGAATGAATATCCATGAATGTACTCCATGAGTATAGGCCGGTGGAATCAGTGACCATTGAATCACTGATTGATTTGTCAGTGGGTCAGTTGCCTTCTAAAAGTGCCACAGTGATTAGTTATTTTGTGCCGCTTCCTGTATAACTGAGGTTTGATCTTCAGGGTAGGTAGTGCTTCACTGGCTGACCCCTTGTGAGCTCAGTTAATGATCTCACCACAACCAGTTCCCTTGGTCCACCTTCTTGGACTTCAACATCAGTTAGCATGTATCTCTTCCAGTCACATCCTGTATTATCAGTCCTTTCCTGGGAGATCTTATAAGAAGCTATGTAACATATAGTATGATTTAATTTACATGTTTTATGTTTAGAGAGAACTCATCTGTACTAACCAAAAAGCTGAGATCTTATAACGAATGCTGTGTAATATACATAGTACAATTTTATTTATACATTTTACTCACAGAGTTTTCATCAGGGCTAACCAAAAGGCTACCAACTTGCTCTAAGGAAAAAAGTAATCCTTTGGGGCTACCCTAGTGGCTCAGACGGTAAAGAATCCACCTGCCAATGCAGGAGACCCAGATTCAATCCCTGGGTCGGGAAGATCCCCTGTAGGAAGAAATGGCAACCCACTCTAATATTCTTGCCTGGAAAACCCCATCAACAGAGGACCCTGGTGGGCTACAGTCCATGGGGTTGCAAAGAATCAGACACAACTGAACAACTAACATACTATTTGGGAGGAGGCAGAGTCCAATATATTAAAAGATTGAATGCCCTGTGGAGACTTTTCTGCCTTTTCCCTCCACCTGTGCTTCATTGTCAATTCATTACTTCATTACTCAAACATTTACTCCACCAGATTCAGGGAAATCTACTGTTCTGCTTCTCTCCTCTTGCTTTAG
Seq C2 exon
TTTTATGATCATCCTGAACCGCTGTTTCCCTATCTTCATGGTGCTGGCCTGGATCTACTCTGTCTCCATGACTGTAAAGAGCATTGTCTTGGAGAAGGAGTTGAGACTGAAGGAAACCTTGAAAAATCAGGGTGTCTCCAACAGGGTGATTTGGTGTACCTGGTTCCTGGACAGCTTCTCTATCATGTCGATGAGCATCTGCCTGCTGACAATATTCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010:ENSBTAT00000023982:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(20.8=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(26.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]