BtaINT0011066 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49627874-49635036:+
Coord C1 exon
chr3:49627874-49628048
Coord A exon
chr3:49628049-49634904
Coord C2 exon
chr3:49634905-49635036
Length
6856 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
CTAATTTCTGCTTTTGGCAGGTC
3' ss Score
8.09
Exon sequences
Seq C1 exon
ACTGCTTCTTTGAACGTGAGCTTCCAGGCTTGGTTCCCGGAGTATGTGTGAAGAATCTGGTAAAGATATTTGAGCCCTATGGCAGGCCAGCCGTGGACCGTCTTAACATTACCTTCTATGAAAGTCAGATTACCGCATTCCTCGGTCACAATGGAGCAGGGAAAACCACGACTTT
Seq A exon
GTGAGTCTTTGATCATTTTCTGACTCTCTTCTTCCTCTATTAGCTTCAGTCTATTCTTTCTCACTCCAGGGCTTCCCTGGTGACTCAGGTAAAGAGGCTGCCTGCAGTGTGGGAGACCCGGTTTCAATCCCTGGGTTGGGAAGATCTCCTGAAGAAGGAAATGGAAGCCCACTCCAATATTCCTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTACAGTCCATGGGGTCACAAAGAGTCAGACACAATTGAGCAACTTCACATTCTTTCCCACAGAAGTTTAGTGAGAAAAATGTGTTCTATATGTGTGTGCAAGGAAGGTATAGTATACTGCAGTTTTCAAAGCTTGCTCACATTTATCATTTTATTAGATCATGAAGTTGGAGAGAGAGGTGGAGTAGTAAGTTCATTGCCCCCTTGGTGCCAGGGATGGGGACATCCAGAGAGCGAAGTGACTTTCCAAGGAAGCCACGTTGTAGTGGTTCCATGGACGCAAGAACCGGATCGTCTCTTGTCTTTGATGCTGTGAGCTGGTCCCCCTATCCCCAGCATCCCCAGCGTTTCTATCATGATGGTGGTGATAAAGTCTTGACCACTACCATCACATGCCCTCCATCTGTAGAGCATTGTGTGTGCTTGCATGCTAAGTCATTTTGGTTCAATTCAGTCACTCAGTTGTGTCTGACTCTTTGCAACCCCATGGACTGCAGGACACCAGGCTTCCCTGTTCATCACCAACTCCCGGGGCTTGCTCAAACTCACGTCCATAGAGTTGGTGATGCCATCCAACCATCTCATCCTCTGTTGTCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGCGTCAGGGTCTTTTCCAATGACTCAGTTCTTTGCATCAGGTGGCCAGACTATCAGAGTTTCATCTTCAGCATCAGTTCTTCCAATGAATATTCAAGACTGATTTCGTTTGGATGGACTGATTTGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCAGTGCTCAGCTTTCTTTATAGTCCAACTTTCACATCCATACATGACTACTGGAAAAACCATAGCTTTGACTAGACAGACCTTTGTTGGCAGAGTAATGTCTGTTTTTTAATATGCTGTCTAGGTTGATCATAGCTTTTCTTCCAAGGAGCAAGCATCTTTTAATTTCATGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCCCAAAATAAAGCTTCTCACTGTTTCCATTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCAGATGCCACGATCTTACTTTTCTGAATGTTGAGTTTTAGGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAAAGGCTCTTTAGTTCTTCGCTTTCTGCCATAAGGGTGGTGTCATTTTCATATCTGAGGTTATTGATATTTCTCCCAGGAATCTTGATTCTAGCTTGTGCTTCATCCAGCCTGGCATTTCACATGATGTTCTCTGCATGTAAGTTAAATAAGCCAGGTGACAATATACAGCCTGGACATACTCCTTTCCCGATTTGGTACCAGTCTGTTGTTCTGAGTCTAGTTCTGTTACTTCTTGACCTGCATACAGTTTTCTCAGGATGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAATTTGTTGTGATCCACGCAATCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTCTTGCTTTTTCGATGATCCAGCAGATGTTGGCAATTTGATCTCTGGTTCCTCTGCTTTTTCTAAATCCAGTTTGAACATCTGAATGTTCACAGTTCACATACTATTGAAGACTAGCTTGGAGAATTTTGAGCATTACTTTGCTAGTGTGTGAGATGAGTGCAATTGTGCAGTAATTTGAGCATTCTTTGGCATTGCCTTTTTTGGGGATTGGAATTGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCATATTTGCTAGCACATTGAGTGCAGCACTTTCACAGCATCATCTTTTAGGATTTGAAATAGCTCAACTGGAATTCCATTACCTCCACTAGCTTTGTTTGTAATGATGCTTCCTAACGCTCACTTGACTTTGCACTCCAGTGATCACACCACTGTGGTTATCTGGGTCATGAAGATCTTTTTTGTATAGTTCTTCTGTGTATTCTTGCCACCTCTTCTTAATATCTTCTGCTTCTTTTAGGTCCATACCATTCTGTCCTTTATTGTGCCCATCTTTGCATGAAATGTTCCCTTGGTATCTAATTTTCTTGAGGAGATCTCTAGTCATTCCCATTCTATTGTTTCCCTCTATTTCTTTGCACTGATACTGAGGAAGGCTTTCTTATCTCTCCTTGTTATTCTTTGGAACTCTGCATTCAAATGCCTATGTCTTTCCTTTTCTCCTTTGCCTTTAGCTTCTGTTCTCTTCTCAGCTATTTGTTAGGCCTCCTCAGACAACCATTTTGCCTTTTTGCATTTCTTTTTCTTGGGGATGGTCTTGATCACTGCCTCCTGAACAATGTCACGAACCTCTATCCATAATTCTTCAGACACTCTGTCTATCAGATCTAATCCCTTGAATCTATTTGTCACTTCCATTGTATAATCATAAGGGATTTGATTTAGATCATACCTGAATCGTCTAGTGGTTTTCCCTACTTTCTTCAATTTCAGTCTGAATTTGGCAATAAGGAGTTCATGATCTGAGCCACAGTCAGCTCCTGGTCTTGTTTTTGCTGACTGTACAGAGCTTCTCCATCTTTGGCTGCAAAGAATATAATCAATCTGATTTCAGTACTGACCGTCTGGTGATGTCCATGTGTAGAGCCTCCTCTTGTGTTGTCGGAAGAGTGTGTTTGCTACGACCAGTGTGTTCTCTTGGCAAAACTCTGTTAGCCTTTGACCTGCTTCATTTTGTACTCCAAGGCCAAATTTGTCTGTTACTCCAGGTATCTCTTGACTTCCTACTTTTGCATTCCAGTCTCTAATAAAAAAGGACATCTTTTTGGGTGTTAGTTTTAGAAGATCTTGTAGGTCTTCATAGAACCATTCAACTTCAGCTTCTTCAGCATTGCTGGTGCTGGGGCACAGACTTGGATTACTCTGATATTGAATGGTTTGCCTTAGAAACGAACAGAGATTATTCTGTCGTTTTTGAGATTGCATCCAAGTACTGCATTTAGGACTCTTTTGTTGACTATTATGGCTACTCTATTTCTTCCAAGGGATTCTTGCCCACAGTAGATATAATGGTCACCTGAGTTAAATTCACCCATTCCAGTCCATCTTAGTCAACTGATTCCTAAATTGTCGATGTTCACTCTTGCCATCTCCTGTTTGATCAATTCCAATTTGCCTTGATTCATGGACCTAACATTCCAGGTTTCTATGCAATATTGCTCTTTACAGCATTGGACTTTACTTCCACCACCAGTCACATCCACAACTGGGTATTGTTTTTGTTTAGGTACCATCTCTTCATTCTATCTGGACTTATTTCTCCACTCATCTCCCATAGCATATTGGGCACCTACTGACCTGGGGAGTTCATCTTTCAGTGCCCTATCTTTTCGCCTTTTCATGCTGTTCATGGGGTTCTCAAAGCTGGAATACTGAAGTGGTTTGCCATTCCCTTCTCCAGTGGGCCACATTTTGTCAGAACTCTCCACCACGACCCATCCATCTTGGGTGGCCCTACATGGCATGGCTCATAGTTTCATTGAGTTAGACAAGGCAGTGATCCATGTGATCAGTTTAGTTAGTTTTCTGTGATTGTGGTTTTCATTCTGTCTGCCCTCTGATGGGTAAGGATAAGAGGCTTATGGAAGTTTCCTGATGGGAGAGACTTACTGAGGGGGAAACTGGGTCTTGTTCTGATGGGCAGGGCCATGCTCAGTGAGTCTTTAACCCAATTGTCTGTTGAGGGCTGTGTTCCGTCCCTGTTGTTTCACCTGAGGGCAAACTATGGTTGAGGTGATGAAGATAATGGGGACCTCTTTCAAAAGATCCCATGCAAGCACTGCCACACTCAGTGCCCCCGACCCTGCAACAGGCCACCATTGACCCACGCCTCCACCGGAGACTCCCGGACACTCACGGGCAAGTCTGGGTCAGTCTCTTGTAGGGTCACTGCTCCTTTCTCCTGGGTCCTGGTGCACACAAGGTTCTGTTTGTGCCCTCCAAGAGTCTGTTTCCCCAGTCCTGTGTAAGTTCTGGTGGCTCTATGGCGGGGTTAACGGCGACCTCCTCCAAGACGGCTTATGCCATACCCAGGTCTGCTGCACCCAGAGCCCCTGCCCGCTGTGGCAGGCCACTGCTCACCTGTACCTTTGCAGGAGACACTCAAACACAGTTCTGGCTCAGTCTCTGTGGGGTCTCTGGGACCTAGTGTACACAAGGCTTTTTTGAGCCCTCTGAGCATCTCTGCCAATAAGGGGTTTGATTCTAAACGCAATTTCACCTCTCCTACCATCTTATGGTGCTACTCCTTTGCCCTTGGATGTGGGTATCTTTTTTGGTGGTATCCAACATTCTCCAGTCAACAGTTGTTCAGCCGCAAGTTGTAGTTTTGGAGTTCTCACAGGAGAAGATGAGTGCACGTCCTTCTACTCTGCCATCTTATGCCACCAGATTTTTCTCTACCACTCATTAAGAAACATCCCTCTTGGGTTCTCAGTGACTCTTCTGAGAAAAATATTCCCCAATCCCATTAGAGGCTAAGTTACAGCATCAGCTTCTCCACACAGGGATGATGTGCCCATCCATATGCAAACCAAGGCAATGATGGAAAGGATTCCTTACATTTGGTTTCTAGGGTCTTCTGATAGATGGCTACCCTCTGAATGCCTTAGTCATTTCAGTCGTGTCCAAGTCTGTGTGACCCTATGGATTGTAGCCTCCTAGGCTCTTTGTCCATGGGATTCTCCAGGCAAGAATACTGGAATGGGTTGCCATGCTCTTCTCCACGGGATCTTCTAACCCAGGAATCAAACCCACATCTCTTAAGTCTCCTGCGTTGGCAGGCGGGTTCTTAACCACTAGCGCTACCTGAGAAGCCTGTAGAGCACTACTTACTTTCAAAGAGCATTCCTTTTCCTACCTGTGAGGGTTGGTGGTAGCTCTGGAGAAAAGGATACATAAAGAATGCTCACTTACAGCCAGAGATCCCTCTGCAACTCAGCCATCACAGCTCCTGGTGCTGTATTAAAATGTTAGTTGCTTGGTCATGTCCGACTCTTTGCAACCCCATGGACTATAGCCCACCAGGCCCATCTGCCCATGGGATTCTCCAGGTAAGAATACTGGAGTAGGTAGTCATTCCAGCCTCCAGGGGATCTTCCTGACCAAGGGGATCAAACCCTGGTCTCCCACATGACAGGAAGATTCTTTACTGTCTGAGCCACCAGGAAGCCCATCGCTCTAGGGGCTCAGTTAAAGGTATTCAGTACATGGGTCCAAGTTTTGTCTGATGTCACCATCACAAAGGGCAAGGTCTTGGTGGGAAGCCCAAGCATTAACATGTGTTTTTTAATTAACTGATTGAACCCAGGTCTGGGAATTATCACCACAACAATTTTGGATCCAAAATAGTAAAAAGCTGAGCAACTGAAAACCAAGTTCAGGAAAGATGAAAGCTCTTCATGGAAGCCTCAGCTCAGGACACTCTCCTGGCTTTTCTAAGGGACCCAGGTGCCATCTGCAGTAAAGAGAACATGGCCATCTAAGGTTCCCCAAGAAACAGCAGGGGCGGCCCTTTCAAGGGGCAGGGAACCCATGTGAATGCACTCATCAAGTCCGTTGGCTTTTTGCAGAGCCCCAGGAAGGAACAGCCGTGTACACCCTGCGTTGGAATGTTCTCTGAGGGCGGGTTCAGTGCCAATGGAATGTGGGGCTGGTGCCATTCCACTTGATTCTGTTTCCCTCTAGTGGTTGATCCAACAGACAAGTTTAGAGAGTCTGAGATTGTATCTGACTCAGGAACAAAGCTGGGAGGAGCAGCACTGACCCATCTCATTTCTCTCCTTGTTAACTAATATGGTCAGAGGACCCCAAACACAAGTATATTACTTCATGCATGAGAAACGCAACATCACCTGGGGGCTGGAACACAATGCTTAATAAAAGTAGTATAACCTTTTTTACTCTTCCTTTATGCTAGCTCTGTTCTAAGTGCTTTAGAGGTAATAATTGTATTTAATCCTCACAAAATACCCCATGAAGTGAGAGTCATCATTTCCCATTTTACAAAAATAAGTTAACAGTGGTGGTGGGCTTTTTCTTACTTTGGATCCAAAATTGTTGTGAGAATTCCCAGGCCTGGGTTCAATCAACTAATTAACAAATACGTGTTGAATGCTTGGGCTTCTCACCAAGACCTTGCACTTTGTGATGGTGACATCAGGCAAAACACAGACCCATGTGCTGAATGCCTTTAACTGAGCCCCCACAGCGCCAGGAGCTGTGATGGCTGAGTGGGGGAGGGATCTCTGGCTATAAGCGAGCATTCTGCATCTGGAAACCCCAGAGGCCCATCGGCACCTGCCTGTGAGCACAAGGGCGTAAGAGAAGCACAGAAGGACGGCAGATGCACTCACCCTCCTGGGGGTCCTGAGGACACACTAGTGCTAAGCCCTGTCTGGGAAACTGTTGGTTCCTGCCACTAGTGATGGTTTGCGTTTAACTGAGAGGCGTGGGTAGAATTACTGAGAGTCCTCATTGACCCCGGGGTGGAGGCTGCTATCCTAAGGTGTTCCAAAGGCCAGGCTCTCTGCCACTAATTTCTGCTTTTGGCAG
Seq C2 exon
GTCCATCATGACCGGTCTGTTGCCACCGACATCCGGGACTGTGCTTGTTGGGGGAAAGGACATTGAAACCAACCTGGATGCTATCCGGCAGAGCCTTGGCATGTGTCCACAGCACAACATCCTGTTCCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010:ENSBTAT00000023982:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.6=45.8)
A:
NA
C2:
PF0000522=ABC_tran=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]