BtaINT0011142 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62057188-62057774:+
Coord C1 exon
chr19:62057188-62057363
Coord A exon
chr19:62057364-62057654
Coord C2 exon
chr19:62057655-62057774
Length
291 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAC
5' ss Score
5.99
3' ss Seq
TTTGTATATTTCTTGTCTAGGTA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GATCAGTTACCATCTATAATAAAAATCTCTCCGAAATGCAAGACTTGGAGGAAATCCGGAAGATAACTGGTGTTTGTCCTCAATTCAATGTTCAGTTTGACACGCTCACTGTAAAGGAGAACCTCAGGCTGTTTGCAAAAATAAAAGGAATTCAGCCAAAGGACGTGGAACAGGAG
Seq A exon
GTACACGGGTGTGCTCAGAGTCTCTGAACTGCCGGACGTTTGCCAAGTTAAGTCAGTGATCTACTGCTCGCTTATAAGTGAAGTGCGGGCAGTGAGGCCCTTTAATACATATTTTATATACATATATATATGGGCTTCCCTGGTGGCTCAGCTGGGAAAGAATACACATGCAGTGTGGGAGACCTGGGTTTGATCCCCGGATTAGGAAGAAGCCCTGGAGAAGGAAATGGCTACCGATTCCATATAATATGAATCATCTTGGATTTCAAGCTTTGTATATTTCTTGTCTAG
Seq C2 exon
GTACAAAGAGTTTTACTGGAATTGGACATACAGAACATTCAGGATAATCTTGCTACACTTTTAAGTGAAGGTCAAAAAAGAAAGCTGACCATTGGGATTGCCCTTTTAGGAGATCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921:ENSBTAT00000009089:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(39.5=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAAAAATCTCTCCGAAATGCAAGA
R:
AGGATCTCCTAAAAGGGCAATCC
Band lengths:
276-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development