RnoINT0010316 @ rn6
Intron Retention
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98519720-98520219:-
Coord C1 exon
chr10:98520044-98520219
Coord A exon
chr10:98519840-98520043
Coord C2 exon
chr10:98519720-98519839
Length
204 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
TTTGTATGTTTCTCATACAGGTA
3' ss Score
10.64
Exon sequences
Seq C1 exon
GGTTAGCCACGGTGTACAATAAAAATCTCTCTGAGATGCAAGACTTGAAGGAAATCAGAAAGATGATTGGTGTTTGTCCTCAACATAATGTGCAATTTGATGCGCTCACTGTGAAGGAGAACCTTACCCTCTTCGCTAATATAAAAGGGATCGTTCCGCAGAGCGTAGCGCAAGAG
Seq A exon
GTAGGCTGCGAGCTTCCTGTATGTCCGCTCCCCGTCATTAACCATGTTCAGTCACCACCACAGAATCCTCTCGGTCGCTCATCCACCTCTCATGGCTGATCTTTAGGCAAAGACATCCTATAAAAATACCTTCTTTAATGGGCATTCCCCTTTGTAAAACTATGATTGGTTTTGTGTTTGGGGCTTTGTATGTTTCTCATACAG
Seq C2 exon
GTACAACAAATCCTGTCGGAGTTGGACATGCAGACGATCCAGGATGAACTGGCTGAACATTTAAGTGAAGGACAGAAAAGAAAGCTCACCTTTGGCGTGGCCATTCTAGGAGACCCTCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890:ENSRNOT00000073149:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(39.5=100)
A:
NA
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTAGCCACGGTGTACAATA
R:
AGGGTCTCCTAGAATGGCCAC
Band lengths:
293-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]