BtaINT0011176 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45168300-45168826:+
Coord C1 exon
chr7:45168300-45168467
Coord A exon
chr7:45168468-45168608
Coord C2 exon
chr7:45168609-45168826
Length
141 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACGCCCAGGTTCCTCCGCAGTGC
3' ss Score
3.63
Exon sequences
Seq C1 exon
AGGCTCCTGCAGATCCAGGACAAGGGAAGGAGGCAGCCAAGACCTGGAGGTGGGGCCAGAGTGGAAGCTCTTCGTGCTTTTCTGAATCCCCGCAGCGGTGGCTACAGCTGGCAGAAGGCCCACGCTGATGTGGGACACCTGGCGGTCACACTGGGCCGTGTGATGGAG
Seq A exon
GTGAGGGACCGTCCACCTGGGAAAACATCTCCGAGGGGAGAGGCAGCCCTGCTGAGGGCCTCTTAGGAGGAAGCGCGGCTCCGCCTTCAGGTCCAGGGGAGGACCCTGGGGCCTCGAACTCACGCCCAGGTTCCTCCGCAG
Seq C2 exon
TGCGTGACTCTGGACAAGCTGGAGGCCGCCCCTTCAGAGGCCGCCCTGGTGGAGCGGGCCCTGAAGCTGCTCTCCGAGCACCGTTTCTGGGCCGGCATCGTCTTCTTGGGGCCCGAGGACTCCCCGGACCCCGCGCAGTCCCCAGGCCCTGGCCACGTGCGCATCAAGATCCGCATGGATATCGATGATGTCGAAAGAACCAATAAGATCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.137
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTACAGCTGGCAGAAG
R:
TCCATGCGGATCTTGATGCG
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]