RnoINT0010352 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12757249-12757845:-
Coord C1 exon
chr7:12757678-12757845
Coord A exon
chr7:12757482-12757677
Coord C2 exon
chr7:12757249-12757481
Length
196 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TGCATGTTCCGCTGCTACAGTGT
3' ss Score
5.14
Exon sequences
Seq C1 exon
AAACTGCTGGATGTGGAGGGCACAGGGTGGCAGCAGCAGACACCCAAAGGCCAGAAGCAGTTGGAGGCTATCAGAGACTTTCTGGATCCTAGTAGGGGTCGATACAACTGGCAGGAGGCTCATGCAGACATGGGGCGCCTGGCAGAAATACTGGGCCAAATCTTGGAG
Seq A exon
GTAAGGGGTCGTCATCATAGAAGGCAGAGAGAGTCTTTCTCTGGCTCTGGAGGACAGAGCAAAGAGACATCTCAAGAGGGGGCCTCCTGGCCATGTATATGGTCTCCTACGGGAACAAGGAACCCAGGGGAAGGAGTCATGGGCTTGGGGGTTCAGTCACACCCCAGAACCTGGGATGCATGTTCCGCTGCTACAG
Seq C2 exon
TGTGTGTCCCTGGACAAGCTGGAGGCTGTGCCCTCAGAGGAAGCTCTTGTGTCCCGTGCCCTGGAGCTGCTGGGTGAGCGCCGCCTCTGGGCAGGCATCGTCTTCCTGAGCCCAGAGCACCCTCTGGACTCATCTGAACCGCCATCTCCAACCACCACGGGTCCTGGCCACCTACGAGTCAAGATTCGAATGGATATTGATGATGTCACAAGGACCAATAAGATCAGGGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGCCAGAAGCAGTTGGA
R:
GATGAGTCCAGAGGGTGCTCT
Band lengths:
258-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]