HsaINT0000784 @ hg38
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1044577-1045231:+
Coord C1 exon
chr19:1044577-1044744
Coord A exon
chr19:1044745-1045001
Coord C2 exon
chr19:1045002-1045231
Length
257 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTCACCCCCGCATCCCACAGTGC
3' ss Score
8.33
Exon sequences
Seq C1 exon
CGGCTCCTGCAGATGCAGGATGAAGGAAGAAGGCAGCCCAGACCTGGAGGCCGGGACCACATGGAGGCCCTGCGATCCTTTCTGGACCCTGGGAGCGGTGGCTACAGCTGGCAGGACGCACACGCTGATGTGGGGCACCTGGTGGGCACGCTGGGCCGAGTGACGGAG
Seq A exon
GTGAGGGCCTGTCCACCTGCGGGGTCTGTTTCAGTGGGGAGGGCAGGTCCCATCCTAGTGTTCCCACCCTGGTGTTCCCAGGGGGAGGCGGGCCCGGCCCTAGTAAGAGCCTGGGATTTGTAGAGATCTCAGGAGGGAGCCGGCCGTGGGCCTACGAGGGGAAAACATGGCCCAGCCCCGAGGTCCAGGGGGAGGAGCGGAGTGGTCTAGGAGGCAGGCGGACCCCAGCGCCTAGGACTCACCCCCGCATCCCACAG
Seq C2 exon
TGCCTGTCCTTGGACAAGCTGGAGGCGGCACCCTCAGAGGCAGCCCTGGTGTCGCGGGCCCTGCAACTGCTCGCGGAACATCGATTCTGGGCCGGCGTCGTCTTCTTGGGACCTGAGGACTCTTCAGACCCCACAGAGCACCCAACCCCAGACCTGGGCCCCGGCCACGTGCGCATCAAAATCCGCATGGACATTGACGTGGTCACGAGGACCAATAAGATCAGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687:ENST00000433129:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=NA C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAAGGAAGAAGGCAGCC
R:
GTGCTCTGTGGGGTCTGAAGA
Band lengths:
292-549
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development