BtaINT0011181 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45170299-45170866:+
Coord C1 exon
chr7:45170299-45170500
Coord A exon
chr7:45170501-45170755
Coord C2 exon
chr7:45170756-45170866
Length
255 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTGAGCACCACTCCCCACAGGCG
3' ss Score
6
Exon sequences
Seq C1 exon
AGCCTTCTGTCGCCCGTGGCCTTCGGTTTTGGCTGCGAGAGCCTGGCGCTGCTGGAGGAGCAGGGCGAGGGCGCGCAGTGGCACAACTTGGGCACCGGGCCTACAGCAGATGTCTTCAGCTTGGCCCAGGTCTCTGGCCTTCTGTTGCTCGATGCTGCTCTCTATGGCCTTGCCACTTGGTACCTGGAGGCGGTGTGCCCAG
Seq A exon
GTGGGCCGTAGGAGACGCAGGGGAGACTGGGCTGAGGGCGGCGCGGACGGGGTGGGGCTGAGGGGGCCTGGAATACAGATGAAAGGGTGGGTCTTCCTGGCACCTGCGCACTGGTGGCTGTGTTTGAGGGACGGCCTGGGGCAGGCAGGCAGGTGGGCGGGGCTTCCTGGTTACCCCTTACCTGCATCCCTGCATCCCAGGTGGGCACACTCCAGGGGGAGCGCCTCAGGGGTAACTGAGCACCACTCCCCACAG
Seq C2 exon
GCGAGTATGGGATCCCCGAACCGTGGAACTTTCCCTTTCGGAGGAGCTACTGGTTTGGGTCTCAGACCCCCAAGGGTCCTGCCCCAGTTCTGACCGCACAGGACCCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(27.4=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGCCTTCGGTTTTGG
R:
GTCCTGTGCGGTCAGAACTG
Band lengths:
293-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]